Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A9176_RS01840 Genome accession   NZ_CP016329
Coordinates   368470..369015 (-) Length   181 a.a.
NCBI ID   WP_010003904.1    Uniprot ID   A0A6L7AHT1
Organism   Leuconostoc garlicum strain KFRI01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 363470..374015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9176_RS01820 (A9176_01800) dnaB 363991..365457 (-) 1467 WP_029510110.1 replicative DNA helicase -
  A9176_RS01825 (A9176_01805) rplI 365460..365912 (-) 453 WP_077281984.1 50S ribosomal protein L9 -
  A9176_RS01830 (A9176_01810) - 365970..367997 (-) 2028 WP_077281985.1 DHH family phosphoesterase -
  A9176_RS01835 (A9176_01815) rpsR 368149..368433 (-) 285 WP_004904499.1 30S ribosomal protein S18 -
  A9176_RS01840 (A9176_01820) ssb 368470..369015 (-) 546 WP_010003904.1 single-stranded DNA-binding protein Machinery gene
  A9176_RS01845 (A9176_01825) rpsF 369049..369345 (-) 297 WP_010003903.1 30S ribosomal protein S6 -
  A9176_RS01850 (A9176_01830) - 369512..369817 (-) 306 WP_029510107.1 hypothetical protein -
  A9176_RS01855 (A9176_01835) - 369904..370737 (-) 834 WP_077281986.1 energy-coupling factor transporter transmembrane component T -
  A9176_RS01860 (A9176_01840) - 370730..372475 (-) 1746 WP_077281987.1 ABC transporter ATP-binding protein -
  A9176_RS01865 (A9176_01845) - 372522..373088 (-) 567 WP_029510104.1 ECF-type riboflavin transporter substrate-binding protein -
  A9176_RS01870 (A9176_01850) - 373110..373973 (-) 864 WP_029510103.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19575.40 Da        Isoelectric Point: 4.6689

>NTDB_id=186968 A9176_RS01840 WP_010003904.1 368470..369015(-) (ssb) [Leuconostoc garlicum strain KFRI01]
MINRVVLIGRLTRDVELRYTQSGTAVGTFSLAVNRQFTNQAGEREADFINAVIWRKAAENFANFTGKGALVAIEGRLQTR
NYENNQGQRVYVTEVVVDNFSLLESRAESDKRRAQNGSSEPSHQGGASFGTPSDNAFGGVDPFATASQANPQATTPTNDA
PNPFAASGKTEIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=186968 A9176_RS01840 WP_010003904.1 368470..369015(-) (ssb) [Leuconostoc garlicum strain KFRI01]
ATGATTAATCGAGTAGTATTGATTGGGCGATTGACCCGTGATGTGGAATTACGTTATACCCAATCGGGTACAGCAGTCGG
CACGTTTAGTTTGGCGGTTAACCGCCAGTTCACCAACCAAGCTGGTGAACGTGAAGCTGACTTTATTAACGCCGTGATTT
GGCGTAAAGCAGCTGAAAATTTTGCAAACTTTACTGGAAAAGGTGCACTAGTTGCCATTGAAGGCCGTTTGCAAACACGG
AATTATGAAAACAACCAAGGACAACGTGTTTACGTGACCGAAGTTGTCGTTGATAATTTCTCATTACTTGAATCACGTGC
TGAAAGTGATAAGCGACGTGCCCAAAACGGGTCGTCAGAACCATCTCATCAGGGTGGTGCGTCATTCGGTACGCCAAGTG
ATAATGCATTTGGTGGCGTTGATCCGTTTGCTACGGCTAGCCAAGCTAACCCACAAGCGACAACACCAACAAATGATGCC
CCTAACCCATTTGCGGCGAGCGGCAAAACAGAAATTGATATATCAGATGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7AHT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.983

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.591

100

0.536

Multiple sequence alignment