Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BBB50_RS09510 Genome accession   NZ_CP016324
Coordinates   2048672..2050039 (-) Length   455 a.a.
NCBI ID   WP_080476252.1    Uniprot ID   -
Organism   Vibrio cholerae 2740-80     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2043672..2055039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBB50_RS09475 (BBB50_09475) moaE 2044395..2044847 (-) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -
  BBB50_RS09480 (BBB50_09480) moaD 2044849..2045094 (-) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  BBB50_RS09485 (BBB50_09485) moaC 2045091..2045570 (-) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  BBB50_RS09490 (BBB50_09490) moaB 2045581..2046093 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  BBB50_RS09495 (BBB50_09495) moaA 2046153..2047142 (-) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  BBB50_RS09500 (BBB50_09500) - 2047448..2048338 (+) 891 WP_000061070.1 YvcK family protein -
  BBB50_RS09505 (BBB50_09505) luxU 2048327..2048668 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  BBB50_RS09510 (BBB50_09510) luxO 2048672..2050039 (-) 1368 WP_080476252.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BBB50_RS09520 (BBB50_09520) uvrB 2050470..2052500 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  BBB50_RS09530 (BBB50_09530) rsxA 2053382..2053963 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  BBB50_RS09535 (BBB50_09535) rsxB 2053963..2054550 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50823.08 Da        Isoelectric Point: 5.5755

>NTDB_id=186932 BBB50_RS09510 WP_080476252.1 2048672..2050039(-) (luxO) [Vibrio cholerae 2740-80]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLIPLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=186932 BBB50_RS09510 WP_080476252.1 2048672..2050039(-) (luxO) [Vibrio cholerae 2740-80]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCCGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.053

99.341

0.378

Multiple sequence alignment