Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | BBB50_RS01635 | Genome accession | NZ_CP016324 |
| Coordinates | 311987..312571 (+) | Length | 194 a.a. |
| NCBI ID | WP_000902745.1 | Uniprot ID | A0A0H6BVQ2 |
| Organism | Vibrio cholerae 2740-80 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 277611..315403 | 311987..312571 | within | 0 |
Gene organization within MGE regions
Location: 277611..315403
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBB50_RS01355 (BBB50_01355) | - | 277611..278147 (-) | 537 | WP_001065600.1 | hypothetical protein | - |
| BBB50_RS01360 (BBB50_01360) | - | 278147..278998 (-) | 852 | WP_001895339.1 | hypothetical protein | - |
| BBB50_RS01365 (BBB50_01365) | - | 278998..279585 (-) | 588 | WP_000510163.1 | YmfQ family protein | - |
| BBB50_RS01370 (BBB50_01370) | - | 279570..280637 (-) | 1068 | WP_001147110.1 | baseplate J/gp47 family protein | - |
| BBB50_RS01375 (BBB50_01375) | - | 280627..281076 (-) | 450 | WP_000095018.1 | phage GP46 family protein | - |
| BBB50_RS01380 (BBB50_01380) | - | 281079..281696 (-) | 618 | WP_170826454.1 | phage baseplate assembly protein V | - |
| BBB50_RS01385 (BBB50_01385) | - | 281690..282769 (-) | 1080 | WP_001286435.1 | phage baseplate assembly protein | - |
| BBB50_RS01390 (BBB50_01390) | - | 282762..284081 (-) | 1320 | WP_000863380.1 | DNA circularization protein | - |
| BBB50_RS19195 | - | 284093..285796 (-) | 1704 | WP_001284562.1 | tape measure protein | - |
| BBB50_RS01405 (BBB50_01405) | - | 285922..286281 (-) | 360 | WP_000996598.1 | phage tail assembly protein | - |
| BBB50_RS01410 (BBB50_01410) | - | 286281..286634 (-) | 354 | WP_001895328.1 | phage tail tube protein | - |
| BBB50_RS01415 (BBB50_01415) | - | 286649..288133 (-) | 1485 | WP_001128141.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| BBB50_RS01420 (BBB50_01420) | - | 288136..288336 (-) | 201 | WP_000437435.1 | DUF2635 domain-containing protein | - |
| BBB50_RS01425 (BBB50_01425) | - | 288350..288949 (-) | 600 | WP_000100991.1 | hypothetical protein | - |
| BBB50_RS01430 (BBB50_01430) | - | 288946..289488 (-) | 543 | WP_000513061.1 | phage virion morphogenesis protein | - |
| BBB50_RS01435 (BBB50_01435) | - | 289488..289922 (-) | 435 | WP_001029276.1 | gp436 family protein | - |
| BBB50_RS01440 (BBB50_01440) | - | 289928..290503 (-) | 576 | WP_000004756.1 | hypothetical protein | - |
| BBB50_RS01445 (BBB50_01445) | - | 290592..291491 (-) | 900 | WP_001218331.1 | Mu-like prophage major head subunit gpT family protein | - |
| BBB50_RS01450 (BBB50_01450) | - | 291494..292450 (-) | 957 | WP_001262460.1 | phage protease | - |
| BBB50_RS01455 (BBB50_01455) | - | 292783..293067 (-) | 285 | WP_001249579.1 | hypothetical protein | - |
| BBB50_RS01460 (BBB50_01460) | - | 293067..293702 (-) | 636 | WP_000638762.1 | hypothetical protein | - |
| BBB50_RS01465 (BBB50_01465) | - | 293699..294211 (-) | 513 | WP_000638754.1 | tail needle knob protein | - |
| BBB50_RS01470 (BBB50_01470) | - | 294208..294456 (-) | 249 | WP_000246042.1 | hypothetical protein | - |
| BBB50_RS01475 (BBB50_01475) | - | 294468..295250 (-) | 783 | WP_412034587.1 | phage minor head protein | - |
| BBB50_RS01480 (BBB50_01480) | - | 295234..296793 (-) | 1560 | WP_000027033.1 | DUF935 domain-containing protein | - |
| BBB50_RS01485 (BBB50_01485) | - | 296790..298355 (-) | 1566 | WP_001105344.1 | terminase family protein | - |
| BBB50_RS01490 (BBB50_01490) | - | 298356..298922 (-) | 567 | WP_001195537.1 | DUF3486 family protein | - |
| BBB50_RS01495 (BBB50_01495) | - | 298934..299224 (-) | 291 | WP_000008606.1 | hypothetical protein | - |
| BBB50_RS01500 (BBB50_01500) | - | 299233..299532 (-) | 300 | WP_000362983.1 | DUF2730 family protein | - |
| BBB50_RS01505 (BBB50_01505) | - | 299532..299762 (-) | 231 | WP_001281317.1 | TraR/DksA C4-type zinc finger protein | - |
| BBB50_RS01510 (BBB50_01510) | - | 299759..300358 (-) | 600 | WP_001120998.1 | hypothetical protein | - |
| BBB50_RS21080 (BBB50_01515) | - | 300334..300621 (-) | 288 | WP_000828640.1 | hypothetical protein | - |
| BBB50_RS01520 (BBB50_01520) | - | 300621..301178 (-) | 558 | WP_000493682.1 | glycoside hydrolase family 108 protein | - |
| BBB50_RS01525 (BBB50_01525) | - | 301263..301679 (-) | 417 | WP_001029055.1 | Mor transcription activator family protein | - |
| BBB50_RS01530 (BBB50_01530) | - | 301758..302204 (-) | 447 | WP_000837433.1 | hypothetical protein | - |
| BBB50_RS01535 (BBB50_01535) | - | 302194..302739 (-) | 546 | WP_000040562.1 | gp16 family protein | - |
| BBB50_RS01540 (BBB50_01540) | - | 302752..303021 (-) | 270 | WP_230078620.1 | hypothetical protein | - |
| BBB50_RS01545 (BBB50_01545) | - | 303033..303266 (-) | 234 | WP_000466681.1 | hypothetical protein | - |
| BBB50_RS01555 (BBB50_01555) | - | 303346..303876 (-) | 531 | WP_000762331.1 | hypothetical protein | - |
| BBB50_RS01560 (BBB50_01560) | - | 303873..304142 (-) | 270 | WP_000856884.1 | DUF3850 domain-containing protein | - |
| BBB50_RS20590 (BBB50_01565) | - | 304145..304495 (-) | 351 | WP_001066644.1 | hypothetical protein | - |
| BBB50_RS01570 (BBB50_01570) | - | 304492..304689 (-) | 198 | WP_000413231.1 | hypothetical protein | - |
| BBB50_RS01575 (BBB50_01575) | - | 304673..304915 (-) | 243 | WP_000551393.1 | hypothetical protein | - |
| BBB50_RS01580 (BBB50_01580) | - | 304908..305180 (-) | 273 | WP_000512064.1 | hypothetical protein | - |
| BBB50_RS01585 (BBB50_01585) | - | 305190..305804 (-) | 615 | WP_001192102.1 | DUF3164 family protein | - |
| BBB50_RS01595 (BBB50_01595) | - | 305954..306328 (-) | 375 | WP_001032752.1 | hypothetical protein | - |
| BBB50_RS01600 (BBB50_01600) | - | 306338..306907 (-) | 570 | WP_001216028.1 | hypothetical protein | - |
| BBB50_RS01605 (BBB50_01605) | - | 306917..307141 (-) | 225 | WP_000157299.1 | hypothetical protein | - |
| BBB50_RS01610 (BBB50_01610) | - | 307149..308093 (-) | 945 | WP_000800334.1 | AAA family ATPase | - |
| BBB50_RS01615 (BBB50_01615) | - | 308120..310123 (-) | 2004 | WP_001895336.1 | transposase domain-containing protein | - |
| BBB50_RS01620 (BBB50_01620) | - | 310135..310359 (-) | 225 | WP_000373567.1 | helix-turn-helix domain-containing protein | - |
| BBB50_RS01625 (BBB50_01625) | - | 310512..311249 (+) | 738 | WP_000005494.1 | LexA family transcriptional regulator | - |
| BBB50_RS01630 (BBB50_01630) | pilM | 311518..311997 (+) | 480 | Protein_293 | type IV pilus assembly protein PilM | - |
| BBB50_RS01635 (BBB50_01635) | pilN | 311987..312571 (+) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| BBB50_RS01640 (BBB50_01640) | pilO | 312564..313154 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BBB50_RS01645 (BBB50_01645) | pilP | 313144..313662 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| BBB50_RS01650 (BBB50_01650) | pilQ | 313688..315403 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21964.42 Da Isoelectric Point: 9.9503
>NTDB_id=186913 BBB50_RS01635 WP_000902745.1 311987..312571(+) (pilN) [Vibrio cholerae 2740-80]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQAGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQAGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=186913 BBB50_RS01635 WP_000902745.1 311987..312571(+) (pilN) [Vibrio cholerae 2740-80]
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCAGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAACAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCAGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAACAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |