Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   B4V05_RS07160 Genome accession   NZ_CP020459
Coordinates   1389050..1389682 (-) Length   210 a.a.
NCBI ID   WP_076632098.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384050..1394682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS07130 (B4V05_07120) - 1384235..1385326 (-) 1092 WP_076632117.1 ABC transporter ATP-binding protein -
  B4V05_RS07135 (B4V05_07125) - 1385482..1386477 (+) 996 WP_076632094.1 YhdH/YhfP family quinone oxidoreductase -
  B4V05_RS07140 (B4V05_07130) - 1386534..1386752 (-) 219 WP_076632095.1 CsbD family protein -
  B4V05_RS07145 (B4V05_07135) - 1386828..1387496 (-) 669 WP_308216778.1 ABC transporter ATP-binding protein -
  B4V05_RS07150 (B4V05_07140) - 1387496..1388554 (-) 1059 WP_076632096.1 ABC transporter permease -
  B4V05_RS07155 (B4V05_07145) - 1388731..1389024 (-) 294 WP_076632097.1 HesB/YadR/YfhF family protein -
  B4V05_RS07160 (B4V05_07150) vraR 1389050..1389682 (-) 633 WP_076632098.1 response regulator transcription factor Regulator
  B4V05_RS07165 (B4V05_07155) - 1389684..1390748 (-) 1065 WP_089535127.1 sensor histidine kinase -
  B4V05_RS07170 (B4V05_07160) liaF 1390745..1391503 (-) 759 WP_076632100.1 cell wall-active antibiotics response protein LiaF -
  B4V05_RS07175 (B4V05_07165) greA 1392400..1392873 (-) 474 WP_011375067.1 transcription elongation factor GreA -
  B4V05_RS07180 (B4V05_07170) udk 1392895..1393569 (-) 675 WP_226474417.1 uridine kinase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23317.87 Da        Isoelectric Point: 4.6711

>NTDB_id=186876 B4V05_RS07160 WP_076632098.1 1389050..1389682(-) (vraR) [Latilactobacillus sakei strain FAM18311]
MIKVLIVDDHEMVRLGISTYLGVQDDLEVVDQAVNGQEGVEKALALRPDAILMDLVMPEMDGIEATKTILKAWPQAKIII
LTSFIDDEKVYPAIEAGAASYILKTSTAEEIANTIRKTTAGQSVLEPEVTNKMMNRMTHQAETKLYEDLTNREREVLGLV
AKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKHQLAD

Nucleotide


Download         Length: 633 bp        

>NTDB_id=186876 B4V05_RS07160 WP_076632098.1 1389050..1389682(-) (vraR) [Latilactobacillus sakei strain FAM18311]
GTGATAAAAGTATTGATTGTAGATGACCATGAGATGGTTCGGTTGGGCATTTCAACCTATTTAGGGGTGCAAGACGATTT
AGAAGTGGTCGATCAAGCCGTTAACGGCCAAGAAGGCGTTGAAAAGGCCTTGGCACTACGGCCAGATGCGATTTTAATGG
ATCTCGTCATGCCTGAAATGGATGGGATTGAAGCCACTAAGACGATTCTAAAGGCTTGGCCTCAAGCCAAGATTATTATT
CTAACCAGCTTTATTGATGATGAAAAAGTCTACCCAGCAATCGAAGCTGGTGCAGCAAGTTACATATTAAAAACGTCGAC
GGCTGAAGAGATTGCCAATACGATTCGGAAGACAACTGCGGGGCAATCAGTTTTAGAACCCGAAGTCACTAACAAGATGA
TGAATCGCATGACGCATCAGGCAGAAACAAAGTTATACGAAGATTTAACGAATCGTGAACGAGAAGTCCTAGGTTTGGTT
GCCAAGGGCCGCAGTAATCAAGAAATTGCGGATGAATTATTTATCACGCTTAAAACGGTTAAGACGCATGTTTCCAATAT
TTTAGCGAAGTTACAAGTCGACGATCGGACGCAGGCCGCAATTTACGCCATCAAGCACCAATTAGCGGATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

61.836

98.571

0.61
  degU Bacillus subtilis subsp. subtilis str. 168

36.986

100

0.386

Multiple sequence alignment