Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   B4V05_RS03525 Genome accession   NZ_CP020459
Coordinates   685691..687739 (+) Length   682 a.a.
NCBI ID   WP_089535176.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 680691..692739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS03500 (B4V05_03490) rpe 681138..681800 (+) 663 WP_011374403.1 ribulose-phosphate 3-epimerase -
  B4V05_RS03505 (B4V05_03495) - 681787..682437 (+) 651 WP_011374404.1 thiamine diphosphokinase -
  B4V05_RS03510 (B4V05_03500) rpmB 682790..682975 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  B4V05_RS03515 (B4V05_03505) - 683278..683640 (+) 363 WP_011374405.1 Asp23/Gls24 family envelope stress response protein -
  B4V05_RS03520 (B4V05_03510) - 683704..685371 (+) 1668 WP_056948340.1 DAK2 domain-containing protein -
  B4V05_RS03525 (B4V05_03515) recG/mmsA 685691..687739 (+) 2049 WP_089535176.1 ATP-dependent DNA helicase RecG Machinery gene
  B4V05_RS03530 (B4V05_03520) plsX 687759..688772 (+) 1014 WP_056948342.1 phosphate acyltransferase PlsX -
  B4V05_RS03535 (B4V05_03525) acpP 688919..689161 (+) 243 WP_011374409.1 acyl carrier protein -
  B4V05_RS03540 (B4V05_03530) - 689634..691280 (+) 1647 WP_056948344.1 peptide ABC transporter substrate-binding protein -
  B4V05_RS03545 (B4V05_03535) opp3b 691350..692285 (+) 936 WP_011374411.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 76030.62 Da        Isoelectric Point: 7.3307

>NTDB_id=186839 B4V05_RS03525 WP_089535176.1 685691..687739(+) (recG/mmsA) [Latilactobacillus sakei strain FAM18311]
MSVLSLTDSVTVLTGVGPKRLTALNQLGIATISDLLYYFPFRYEDLKVKDLSEAVDQEKVTLKGTVVADPVVSRWGPGKT
RLNVRLLINHDVIMVTFFNQPYLKDKFEAGVDIAVYGKWDARRNSLTGMKVLAVQSADNPSFAAIYSTNKNVRQGTLVKL
IREAFDNYQSVIPDLIPADIRERYKLVSEVELIAGMHFPESYPEAKQARRTAIFHEFFLYQLQLQAIKQADRHVENGLAL
PYQNAALKEFIKTLPFDLTDAQKRVVNEICLDLKAPAHMNRLLQGDVGSGKTIVAAIAMFAAVTAGFQAALMVPTEILAE
QHYQSLQKLYAPMNVTVGLLTGSTTAKERRTLLADIESGRINIIVGTHALIQDAVVYHKLGFAVIDEQHRFGVNQRRMLR
KKGLQPDMLAMTATPIPRTLAITAYGEMDVSTIDELPKGRIPIETSWVRSNQVEQALSFVQKQLADNSQVFAITPLIAES
EQMDLKNAEEIYATLAERFEPQYHVALLHGKLKDDEKNRIMTAFSNNEIQLLVSTTVVEVGVDVPNATVMMIFDADRFGL
AQLHQLRGRVGRGKKKAYCLLIADPKNQQGVDRMTIMTETTNGFVVAQKDLELRGPGEVFGDRQSGLPVFKVGDPVADFV
SLQVAQQEVQKIFTVDPTFSQPAYAPLKAYLAQQKQNYQTLD

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=186839 B4V05_RS03525 WP_089535176.1 685691..687739(+) (recG/mmsA) [Latilactobacillus sakei strain FAM18311]
CTGTCAGTGTTAAGTTTAACGGATTCTGTGACTGTTTTAACGGGTGTTGGCCCGAAGCGTTTGACAGCCCTCAATCAATT
AGGAATCGCAACAATCAGTGATCTATTGTATTATTTTCCGTTTCGTTACGAGGATTTAAAGGTTAAGGATCTCTCAGAAG
CGGTCGATCAGGAAAAGGTTACCTTAAAAGGAACCGTTGTTGCTGATCCAGTCGTCAGTCGTTGGGGACCGGGTAAGACA
CGGCTAAACGTCCGGTTATTGATTAATCATGATGTCATTATGGTGACTTTTTTCAACCAACCTTACTTGAAGGATAAATT
TGAAGCCGGTGTTGATATTGCTGTTTATGGTAAATGGGATGCTAGACGGAATAGTTTAACCGGGATGAAGGTTTTAGCGG
TTCAATCGGCTGATAATCCTTCGTTCGCGGCGATTTATTCAACCAATAAAAACGTGCGTCAAGGCACGCTCGTGAAATTG
ATTCGCGAAGCATTTGATAATTATCAAAGTGTCATTCCGGATTTGATTCCAGCTGATATTCGTGAGCGGTATAAATTAGT
TTCTGAAGTGGAACTGATTGCCGGAATGCATTTTCCGGAAAGCTATCCAGAAGCAAAGCAGGCTCGACGGACTGCTATTT
TCCACGAGTTTTTCTTGTATCAACTGCAGTTGCAGGCGATTAAACAAGCAGACCGCCATGTTGAAAATGGCTTAGCACTG
CCTTATCAAAACGCAGCCCTCAAGGAATTTATTAAGACATTACCGTTTGATTTAACGGATGCTCAAAAGCGGGTGGTCAA
CGAAATTTGTTTAGACCTTAAGGCACCGGCACATATGAATCGCCTTTTACAAGGGGATGTTGGGTCTGGGAAGACGATTG
TCGCGGCGATTGCGATGTTTGCTGCGGTGACGGCCGGTTTCCAAGCGGCCTTAATGGTGCCCACCGAAATTTTGGCGGAA
CAACATTATCAGAGCCTACAAAAGCTTTATGCACCAATGAATGTGACGGTTGGGTTACTAACTGGTTCGACAACCGCCAA
GGAGCGCCGGACGTTGTTGGCGGATATTGAATCCGGTCGGATCAATATCATTGTCGGCACGCACGCACTTATTCAAGATG
CCGTGGTTTACCATAAGTTAGGCTTTGCCGTCATTGATGAACAACATCGATTTGGGGTCAATCAACGGCGCATGCTACGT
AAAAAAGGCTTGCAGCCTGATATGCTGGCAATGACAGCGACACCGATTCCGCGGACTTTGGCGATTACCGCCTATGGCGA
AATGGATGTTTCGACCATCGATGAGTTACCTAAAGGTCGGATTCCAATTGAAACCAGTTGGGTGCGTAGTAACCAGGTTG
AACAAGCGCTCTCGTTTGTTCAAAAACAATTAGCTGACAACTCGCAAGTTTTTGCGATTACGCCGTTAATTGCGGAGTCG
GAACAAATGGATCTCAAAAATGCGGAAGAAATATACGCGACTTTGGCGGAGCGGTTTGAGCCGCAGTACCATGTGGCACT
ATTACATGGTAAGTTGAAGGATGATGAGAAAAACCGGATTATGACGGCTTTTTCAAATAACGAGATTCAACTACTGGTTT
CAACGACCGTTGTTGAAGTCGGGGTCGATGTGCCTAATGCGACCGTGATGATGATTTTTGATGCTGACCGGTTTGGCTTA
GCCCAACTTCATCAATTGCGTGGCCGGGTTGGTCGGGGTAAGAAAAAGGCCTACTGTCTATTGATTGCCGATCCTAAGAA
TCAACAAGGTGTAGATCGAATGACGATCATGACCGAAACGACCAACGGTTTTGTTGTTGCGCAAAAAGATTTGGAATTAC
GAGGCCCTGGTGAGGTCTTTGGCGATCGGCAATCGGGATTACCAGTCTTCAAGGTTGGTGATCCAGTCGCTGATTTTGTC
AGCTTACAGGTCGCACAACAAGAAGTACAAAAAATCTTCACGGTTGATCCTACTTTTAGCCAACCGGCGTACGCGCCTTT
AAAAGCGTATCTCGCACAACAAAAACAAAACTATCAAACATTAGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(600-673)

RecG wedge domain (RecG_wedge)

(14-164)

Helicase conserved C-terminal domain (Helicase_C)

(465-573)

DEAD/DEAH box helicase (DEAD)

(259-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

51.187

98.827

0.506
  recG/mmsA Streptococcus pneumoniae R36A

51.187

98.827

0.506
  recG Bacillus subtilis subsp. subtilis str. 168

49.17

97.214

0.478