Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   B4V05_RS00020 Genome accession   NZ_CP020459
Coordinates   3350..4477 (+) Length   375 a.a.
NCBI ID   WP_076631985.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FAM18311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4V05_RS00005 (B4V05_00005) dnaA 210..1556 (+) 1347 WP_076631983.1 chromosomal replication initiator protein DnaA -
  B4V05_RS00010 (B4V05_00010) dnaN 1734..2873 (+) 1140 WP_076631984.1 DNA polymerase III subunit beta -
  B4V05_RS00015 (B4V05_00015) yaaA 3116..3343 (+) 228 WP_016264312.1 S4 domain-containing protein YaaA -
  B4V05_RS00020 (B4V05_00020) recF 3350..4477 (+) 1128 WP_076631985.1 DNA replication/repair protein RecF Machinery gene
  B4V05_RS00025 (B4V05_00025) gyrB 4499..6490 (+) 1992 WP_076631986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  B4V05_RS00030 (B4V05_00030) gyrA 6538..9111 (+) 2574 WP_056946786.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43278.17 Da        Isoelectric Point: 6.7826

>NTDB_id=186807 B4V05_RS00020 WP_076631985.1 3350..4477(+) (recF) [Latilactobacillus sakei strain FAM18311]
MYLSELQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALARSHRTNTDRELIQWHEDFAKITGLVQRSAGK
TPLELVLSQKGKKAKVNHLEQAKLSQYIGRLNVVLFAPEDLNIVKGSPAVRRHFIDMEFGQMSSKYLYNISQYKSILKQR
NQYLKQLQRRQAKDLVYLGVLSDQLAAYGAEVTVARRQFLQQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLDQSVEE
LYQQFQTLYEKQQTREVEQGTTLIGPHRDDVQFLVNDKDVQAFGSQGQQRTTALSVKLAEIDLMKAQTGEYPILLLDDVL
SELDDLRQTHLLKTFQNKVQTFLTTTSLENVKKEIIATPRVFTVTNGVVTEEQVE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=186807 B4V05_RS00020 WP_076631985.1 3350..4477(+) (recF) [Latilactobacillus sakei strain FAM18311]
ATGTATCTAAGCGAACTACAACTGAATCATTATCGTAATTATGAGTCAGTTGATGTGCACTTTTCACCGGATACGAACGT
CTTGATTGGTGAAAATGCGCAGGGGAAAACGAACCTACTAGAAGCAATCTACGTTTTAGCCTTGGCCCGCTCACATCGTA
CGAATACCGATCGCGAATTAATTCAATGGCATGAAGACTTCGCTAAAATTACCGGTTTGGTCCAACGTTCTGCAGGGAAA
ACCCCGTTAGAGCTCGTTTTAAGCCAAAAAGGTAAAAAGGCGAAGGTCAATCATTTAGAACAGGCTAAGTTATCACAATA
TATTGGTCGGCTAAACGTCGTGTTATTTGCGCCGGAGGATTTAAACATCGTTAAGGGTTCGCCAGCTGTGAGACGCCATT
TCATCGATATGGAATTCGGGCAGATGAGTAGCAAGTATCTCTATAATATTTCGCAATACAAATCAATTCTGAAACAGCGT
AATCAATATCTTAAGCAACTCCAACGGCGCCAAGCCAAGGATCTTGTTTATTTAGGTGTTTTATCCGATCAATTAGCGGC
TTACGGGGCGGAAGTGACCGTAGCCCGGCGCCAGTTTCTCCAACAAATGGAAAAATGGGCCCAAAAATTGCATCAGGAGA
TTACGAAGGATCGGGAAGTCTTGACGTTTAAATATCAAAGTCAAATTCCAGAAGAACAATTAGATCAAAGTGTCGAAGAA
CTCTATCAACAATTTCAAACCTTGTATGAGAAACAACAAACCCGTGAGGTTGAACAAGGCACGACGTTGATTGGTCCCCA
CCGCGATGATGTTCAATTTTTAGTCAACGATAAGGATGTGCAGGCCTTTGGTTCCCAAGGGCAACAACGGACAACCGCGT
TGAGTGTCAAATTGGCCGAAATTGACTTGATGAAGGCCCAAACCGGGGAATACCCGATTTTATTACTGGACGATGTGTTG
TCGGAATTAGACGATTTACGCCAAACACATTTGTTGAAGACGTTCCAAAACAAAGTCCAAACATTCCTCACAACAACCAG
TTTAGAGAATGTTAAAAAAGAAATTATTGCGACGCCGCGCGTGTTTACAGTCACCAACGGGGTCGTCACAGAAGAACAAG
TAGAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

56.183

99.2

0.557
  recF Streptococcus pneumoniae R6

48.509

98.4

0.477