Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   A0O31_RS05590 Genome accession   NZ_CP016312
Coordinates   1071074..1073107 (-) Length   677 a.a.
NCBI ID   WP_071677020.1    Uniprot ID   A0A1J0LUE3
Organism   Thermus brockianus strain GE-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1064212..1074690 1071074..1073107 within 0


Gene organization within MGE regions


Location: 1064212..1074690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O31_RS05560 (A0O31_01144) dnaN 1064212..1065330 (-) 1119 WP_071677015.1 DNA polymerase III subunit beta -
  A0O31_RS05565 (A0O31_01145) dnaA 1065632..1066945 (-) 1314 WP_071677016.1 chromosomal replication initiator protein DnaA -
  A0O31_RS05570 (A0O31_01146) mnmG 1066998..1068800 (+) 1803 WP_420855814.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  A0O31_RS05575 rsmG 1068829..1069553 (+) 725 Protein_1088 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  A0O31_RS05580 (A0O31_01148) soj 1069547..1070296 (+) 750 WP_071677018.1 chromosome-partitioning ATPase Soj -
  A0O31_RS05585 (A0O31_01149) - 1070280..1071086 (+) 807 WP_071677019.1 ParB/RepB/Spo0J family partition protein -
  A0O31_RS05590 (A0O31_01150) comA/comEC 1071074..1073107 (-) 2034 WP_071677020.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A0O31_RS05595 (A0O31_01151) comEA 1073094..1073402 (-) 309 WP_071677021.1 ComEA family DNA-binding protein Machinery gene
  A0O31_RS13050 (A0O31_01152) - 1073375..1073638 (-) 264 WP_237259051.1 hypothetical protein -
  A0O31_RS05605 (A0O31_01153) - 1074061..1074690 (+) 630 WP_071677930.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 72008.50 Da        Isoelectric Point: 10.2011

>NTDB_id=186785 A0O31_RS05590 WP_071677020.1 1071074..1073107(-) (comA/comEC) [Thermus brockianus strain GE-1]
MSAPRGGLGLGLGLGGVLGALGLLHPWALLLALPLLPLFRLPLAAGLALVLLRGFLFPLPEPPYGKRLEGVFAVRGGFTS
AEGYRLYVRHYPPLPDGVYRLVGYIAPPETRRNPGGFDQGTWLRSLGVRGVFHVEQKEALAPLPDPREAWRRRLVQGLSP
PVAELTEGLVLGDKEGLEAAYAWFQKAGLAHLLALSGLHVGFLLGAVLVLPLGRWRYLLALLLLPFYLWLAGPSPSLVRA
SLMAGLSLLGLFLGLGTAGVLQALGLALFLQLLLAPHALLSLGLQLSYLAVLGLALVLPALERPSGLRGYVASALAATLA
AQALLVPLLLHRFGFLPLLSPLTNLLALPLVALLVPLGFLKLFLGGLLAPLAEPLGQALLGLAQMGAKGPLLRWGEISPL
GFALYYLGLLPLLAALHRKIPWRKALLLTSLPILASLLAAWPKPLDLHLLDVGQGDALLARMGGAEVLVDGGRSEQAEKL
LRALRALGIEDLELLVATHPDADHAGSLPQVVAELPIGLALLSPAFPQDHPLVQALKAKGVPTLYPGAGSRFRVGKGEVR
VLWPARLSRDENRDGLALLLDFGRGQALLLADLPVEVERALEVGPVDVLKVSHHGSRTGTSETLVSQAKPKVALIGVGNN
PFGHPHPEVVKRLEGRGVQVFRTDRDGAVRVLFGYAW

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=186785 A0O31_RS05590 WP_071677020.1 1071074..1073107(-) (comA/comEC) [Thermus brockianus strain GE-1]
ATGTCCGCCCCTAGGGGAGGCCTGGGCTTAGGGCTTGGCCTAGGGGGCGTCCTGGGGGCGCTAGGGCTTCTCCACCCTTG
GGCCCTCCTCCTCGCCCTGCCCCTTCTCCCCCTCTTCCGCCTGCCCCTGGCGGCCGGGCTCGCCCTGGTGCTCCTGCGCG
GGTTCCTCTTCCCCCTCCCCGAGCCCCCCTATGGGAAGAGGCTTGAGGGGGTCTTTGCCGTGCGGGGCGGGTTTACCTCC
GCCGAGGGGTACCGCCTTTACGTGCGCCACTACCCGCCCCTTCCCGACGGGGTTTACCGCCTCGTTGGGTACATCGCCCC
GCCCGAAACCAGGCGCAACCCCGGGGGGTTTGACCAAGGGACCTGGCTCCGCTCCTTGGGGGTACGGGGGGTGTTTCACG
TGGAACAGAAGGAGGCGCTAGCCCCTTTGCCCGACCCCCGGGAGGCCTGGCGAAGGCGGCTCGTCCAGGGGCTCTCCCCG
CCCGTGGCGGAGCTCACCGAGGGCCTCGTCCTGGGGGACAAGGAGGGCCTCGAGGCGGCCTACGCCTGGTTTCAGAAAGC
AGGCCTCGCCCACCTCCTCGCCCTTTCGGGCCTCCACGTGGGCTTTTTGCTGGGGGCGGTCCTCGTCCTCCCTTTAGGGC
GGTGGCGCTACCTCCTGGCCCTTCTCCTCCTGCCCTTTTACCTATGGCTTGCCGGGCCAAGCCCCTCCCTGGTGCGGGCA
AGCCTCATGGCGGGGCTCTCCCTCCTAGGGCTTTTCCTGGGCCTGGGAACGGCCGGGGTGCTCCAGGCCCTGGGCCTCGC
CCTCTTCCTCCAGCTCCTCCTCGCTCCCCACGCCCTTCTAAGCCTAGGCCTGCAGCTCTCCTACCTAGCGGTCCTGGGCT
TGGCCCTCGTCCTCCCTGCCCTAGAACGGCCTTCAGGGCTTCGAGGCTACGTGGCCAGCGCCCTGGCGGCCACCCTGGCC
GCCCAAGCCCTCCTCGTCCCCCTCCTCCTCCACCGCTTCGGCTTCCTGCCCCTCCTCTCGCCCCTCACCAACCTCCTCGC
CCTCCCCCTGGTGGCCCTCCTGGTCCCCTTGGGGTTTCTCAAGCTCTTCCTGGGGGGGCTCCTCGCCCCCCTAGCGGAAC
CCTTGGGGCAAGCCCTCTTGGGCCTCGCCCAGATGGGCGCCAAGGGGCCCCTCTTGAGATGGGGGGAGATCTCCCCTTTG
GGCTTCGCCCTCTACTACCTGGGGCTCCTTCCCCTCCTCGCCGCCCTTCACCGCAAGATTCCCTGGCGCAAGGCCCTCCT
CCTCACCTCCCTCCCCATCCTCGCCAGCCTCCTCGCCGCCTGGCCCAAACCCCTGGACCTCCACCTCCTGGACGTGGGCC
AGGGGGACGCCCTCCTCGCCCGCATGGGCGGGGCGGAGGTCTTGGTGGACGGTGGGCGGAGCGAGCAGGCGGAAAAGCTC
CTAAGGGCCCTCCGCGCCCTGGGGATAGAGGACCTAGAGCTTCTCGTGGCCACCCATCCCGACGCCGACCACGCGGGGAG
CCTGCCCCAGGTGGTGGCCGAGCTTCCCATAGGCCTCGCCCTCCTCTCCCCCGCCTTCCCCCAGGACCACCCCCTGGTCC
AGGCCCTAAAGGCCAAGGGTGTGCCCACCCTCTATCCAGGAGCGGGAAGCCGCTTCCGGGTGGGGAAGGGGGAGGTGCGG
GTCCTCTGGCCCGCCCGCCTGAGCCGTGACGAAAACCGGGATGGCCTCGCCCTCCTCCTGGACTTTGGCCGAGGCCAGGC
CCTCCTCCTCGCCGATCTCCCCGTGGAGGTGGAAAGGGCCCTCGAGGTAGGCCCGGTGGACGTCCTTAAGGTGAGCCACC
ACGGCTCCCGCACGGGCACCTCCGAAACCCTGGTTTCCCAGGCCAAGCCCAAGGTCGCCTTGATCGGCGTGGGCAACAAC
CCTTTCGGCCACCCCCATCCGGAGGTCGTAAAGCGGCTTGAGGGGCGCGGGGTCCAGGTCTTCCGCACCGACCGGGATGG
GGCCGTGCGGGTCCTTTTCGGCTACGCCTGGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(169-418)

Metallo-beta-lactamase superfamily (Lactamase_B)

(452-635)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0LUE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Thermus thermophilus HB27

71.833

99.114

0.712

Multiple sequence alignment