Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | VSVS12_RS03340 | Genome accession | NZ_CP016307 |
| Coordinates | 709225..709839 (-) | Length | 204 a.a. |
| NCBI ID | WP_009385704.1 | Uniprot ID | F9RAI6 |
| Organism | Vibrio scophthalmi strain VS-12 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 704225..714839
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS12_RS03330 (VSVS12_00668) | aceF | 705539..707428 (+) | 1890 | WP_065429816.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
| VSVS12_RS03335 (VSVS12_00669) | lpdA | 707712..709142 (+) | 1431 | WP_005593190.1 | dihydrolipoyl dehydrogenase | - |
| VSVS12_RS03340 (VSVS12_00670) | opaR | 709225..709839 (-) | 615 | WP_009385704.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| VSVS12_RS03345 (VSVS12_00671) | hpt | 710247..710777 (+) | 531 | WP_005593192.1 | hypoxanthine phosphoribosyltransferase | - |
| VSVS12_RS03350 (VSVS12_00672) | can | 710877..711545 (-) | 669 | WP_005593193.1 | carbonate dehydratase | - |
| VSVS12_RS03355 (VSVS12_00673) | - | 711791..712270 (+) | 480 | Protein_615 | SulP family inorganic anion transporter | - |
| VSVS12_RS03360 (VSVS12_00674) | - | 712377..713585 (+) | 1209 | WP_032073033.1 | IS4 family transposase | - |
| VSVS12_RS03365 (VSVS12_00675) | - | 713588..714802 (+) | 1215 | Protein_617 | SulP family inorganic anion transporter | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23543.80 Da Isoelectric Point: 5.5931
>NTDB_id=186755 VSVS12_RS03340 WP_009385704.1 709225..709839(-) (opaR) [Vibrio scophthalmi strain VS-12]
MDSIAKRPRTRLSPKKRKQQLMDISLDVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKQNLANLTSEMVNLIAEDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAMERGEVCNDHDPA
DLATLFHGICYSLFVQANRHTDEQAMLKLADSYLNMLCIYKEDQ
MDSIAKRPRTRLSPKKRKQQLMDISLDVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLHAKQNLANLTSEMVNLIAEDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAMERGEVCNDHDPA
DLATLFHGICYSLFVQANRHTDEQAMLKLADSYLNMLCIYKEDQ
Nucleotide
Download Length: 615 bp
>NTDB_id=186755 VSVS12_RS03340 WP_009385704.1 709225..709839(-) (opaR) [Vibrio scophthalmi strain VS-12]
ATGGACTCTATAGCAAAAAGACCCCGCACCCGACTCTCGCCCAAAAAACGTAAGCAACAGCTGATGGATATTTCTCTGGA
TGTATTTGCGCGCCGTGGGATTGGTCGTGGTGGTCATGCCGATATTGCAGAAATTGCACAAGTATCGGTCGCAACGGTAT
TCAACTACTTCCCAACACGTGAAGACTTAGTCGATGATGTACTGAACTATGTGGTACGTCAGTTCTCTAATTTTCTGTCA
GACAATATCGACCTAGATTTACACGCTAAACAGAACCTCGCGAATTTGACATCAGAGATGGTTAATCTCATCGCTGAAGA
TTGTCATTGGCTTAAAGTGTGGTTTGAGTGGAGCGCGTCAACCCGTGATGAAGTCTGGCCACTGTTTGTTAGCACCAACC
GAACTAACCAGCTATTAGTGCAAAACATGTTTATCAAAGCGATGGAACGCGGCGAAGTGTGTAACGATCATGATCCTGCT
GATCTTGCCACGCTATTCCACGGCATTTGTTATTCACTGTTTGTGCAAGCTAACCGCCACACCGATGAACAAGCGATGTT
GAAGCTAGCGGACAGCTACCTAAACATGCTGTGTATTTACAAAGAAGACCAATAA
ATGGACTCTATAGCAAAAAGACCCCGCACCCGACTCTCGCCCAAAAAACGTAAGCAACAGCTGATGGATATTTCTCTGGA
TGTATTTGCGCGCCGTGGGATTGGTCGTGGTGGTCATGCCGATATTGCAGAAATTGCACAAGTATCGGTCGCAACGGTAT
TCAACTACTTCCCAACACGTGAAGACTTAGTCGATGATGTACTGAACTATGTGGTACGTCAGTTCTCTAATTTTCTGTCA
GACAATATCGACCTAGATTTACACGCTAAACAGAACCTCGCGAATTTGACATCAGAGATGGTTAATCTCATCGCTGAAGA
TTGTCATTGGCTTAAAGTGTGGTTTGAGTGGAGCGCGTCAACCCGTGATGAAGTCTGGCCACTGTTTGTTAGCACCAACC
GAACTAACCAGCTATTAGTGCAAAACATGTTTATCAAAGCGATGGAACGCGGCGAAGTGTGTAACGATCATGATCCTGCT
GATCTTGCCACGCTATTCCACGGCATTTGTTATTCACTGTTTGTGCAAGCTAACCGCCACACCGATGAACAAGCGATGTT
GAAGCTAGCGGACAGCTACCTAAACATGCTGTGTATTTACAAAGAAGACCAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
79.902 |
100 |
0.799 |
| hapR | Vibrio cholerae C6706 |
77.889 |
97.549 |
0.76 |
| hapR | Vibrio cholerae strain A1552 |
77.889 |
97.549 |
0.76 |