Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   A6J87_RS04590 Genome accession   NZ_CP020451
Coordinates   926485..927258 (-) Length   257 a.a.
NCBI ID   WP_080611633.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 921485..932258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS04575 (A6J87_04560) purC 924054..924761 (-) 708 WP_070575642.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  A6J87_RS04580 (A6J87_04565) - 925024..925269 (-) 246 WP_070575639.1 phosphopantetheine-binding protein -
  A6J87_RS04585 (A6J87_04570) plsX 925269..926273 (-) 1005 WP_013989885.1 phosphate acyltransferase PlsX -
  A6J87_RS04590 (A6J87_04575) recO 926485..927258 (-) 774 WP_080611633.1 DNA repair protein RecO Machinery gene
  A6J87_RS04595 (A6J87_04580) - 927245..928420 (-) 1176 WP_070575634.1 pyridoxal phosphate-dependent aminotransferase -
  A6J87_RS04600 (A6J87_04585) - 928512..929477 (-) 966 WP_070575631.1 ribose-phosphate diphosphokinase -
  A6J87_RS04605 (A6J87_04590) - 929690..931201 (-) 1512 WP_070575628.1 CHAP domain-containing protein -
  A6J87_RS04610 (A6J87_04595) mreD 931286..931810 (-) 525 WP_037599472.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29792.94 Da        Isoelectric Point: 4.8553

>NTDB_id=186746 A6J87_RS04590 WP_080611633.1 926485..927258(-) (recO) [Streptococcus salivarius strain FDAARGOS_259]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDATIADGVTDAQLFVFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSFKFSGLLCPNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRYFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=186746 A6J87_RS04590 WP_080611633.1 926485..927258(-) (recO) [Streptococcus salivarius strain FDAARGOS_259]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGGAAACGGATGTTTTTTGTTAGAGGTGGTGGATCAGGTAAATTAAGTGCTGTCATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAAGATTATAGTCAGGCAGAGTCCTTCAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTGGCTGCATTGACAGATGCTACTATTGCTGATGGTGTGAC
AGATGCGCAATTATTTGTATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATTTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGCGTACGCTTGAATTTTCACGAGTGTGTCTTTTGTCATCGTGTAGGCCTT
CCTTTTGATTTCTCGTTTAAGTTCTCGGGACTACTTTGTCCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTGGA
CCCTAATGTGCCTTATCTTTTAGATCGTTTTCAGGGGCTTTCCTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGATATTTTATCGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAATTTATT
GATAATCTAAATTCTTGGGGCCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619

Multiple sequence alignment