Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | VSVS12_RS01540 | Genome accession | NZ_CP016307 |
| Coordinates | 328171..328710 (+) | Length | 179 a.a. |
| NCBI ID | WP_065429643.1 | Uniprot ID | - |
| Organism | Vibrio scophthalmi strain VS-12 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 323171..333710
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSVS12_RS01525 (VSVS12_00305) | - | 324024..326354 (+) | 2331 | WP_065429641.1 | Tex family protein | - |
| VSVS12_RS01530 (VSVS12_00306) | - | 326486..326956 (-) | 471 | WP_005596930.1 | hypothetical protein | - |
| VSVS12_RS01535 (VSVS12_00307) | bioH | 327048..327890 (-) | 843 | WP_065429642.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| VSVS12_RS01540 (VSVS12_00308) | comF | 328171..328710 (+) | 540 | WP_065429643.1 | ComF family protein | Machinery gene |
| VSVS12_RS01545 (VSVS12_00309) | nfuA | 328818..329405 (+) | 588 | WP_005596938.1 | Fe-S biogenesis protein NfuA | - |
| VSVS12_RS01550 (VSVS12_00310) | nudE | 329650..330198 (+) | 549 | WP_005596939.1 | ADP compounds hydrolase NudE | - |
| VSVS12_RS01555 (VSVS12_00311) | cysQ | 330224..331051 (+) | 828 | WP_005596941.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 20478.81 Da Isoelectric Point: 9.7688
>NTDB_id=186746 VSVS12_RS01540 WP_065429643.1 328171..328710(+) (comF) [Vibrio scophthalmi strain VS-12]
MTTLHPVAQCGHCLSQPPAWRQLYCVGDYTPPLSDYVQQLKFARQLHYVEVLADLLALQVQPNIQMITYVPLHWHRQLWR
GFNQSEFLARALAQRLGLPCRALFKRTRATRSQRGMDRRQRQRNLRGAFTLTKGVTELQSVAIVDDVVTTGSTVQQLCKL
LLDAGVKSVDIYCICRTPE
MTTLHPVAQCGHCLSQPPAWRQLYCVGDYTPPLSDYVQQLKFARQLHYVEVLADLLALQVQPNIQMITYVPLHWHRQLWR
GFNQSEFLARALAQRLGLPCRALFKRTRATRSQRGMDRRQRQRNLRGAFTLTKGVTELQSVAIVDDVVTTGSTVQQLCKL
LLDAGVKSVDIYCICRTPE
Nucleotide
Download Length: 540 bp
>NTDB_id=186746 VSVS12_RS01540 WP_065429643.1 328171..328710(+) (comF) [Vibrio scophthalmi strain VS-12]
ATGACAACGCTTCATCCGGTTGCTCAATGTGGTCATTGTTTGTCGCAACCGCCAGCTTGGCGGCAACTCTATTGTGTTGG
TGACTACACGCCGCCATTGTCCGATTATGTTCAGCAATTAAAGTTTGCTCGTCAGCTGCATTATGTTGAGGTATTGGCCG
ATCTGCTTGCTCTACAAGTCCAACCAAATATTCAGATGATCACTTATGTTCCGTTACACTGGCATCGGCAATTGTGGCGT
GGATTTAATCAAAGTGAATTTCTAGCGCGAGCGTTGGCGCAGCGACTCGGTCTTCCTTGCCGAGCATTGTTTAAGCGTAC
TCGTGCTACTCGTTCGCAACGGGGTATGGATCGCCGGCAACGACAACGTAATTTACGTGGCGCATTTACGCTGACGAAAG
GCGTGACTGAACTTCAATCCGTCGCGATTGTTGATGATGTAGTGACGACAGGGAGTACTGTGCAGCAATTATGCAAATTA
CTACTTGATGCTGGAGTTAAAAGTGTTGATATTTACTGTATCTGCCGTACTCCTGAATGA
ATGACAACGCTTCATCCGGTTGCTCAATGTGGTCATTGTTTGTCGCAACCGCCAGCTTGGCGGCAACTCTATTGTGTTGG
TGACTACACGCCGCCATTGTCCGATTATGTTCAGCAATTAAAGTTTGCTCGTCAGCTGCATTATGTTGAGGTATTGGCCG
ATCTGCTTGCTCTACAAGTCCAACCAAATATTCAGATGATCACTTATGTTCCGTTACACTGGCATCGGCAATTGTGGCGT
GGATTTAATCAAAGTGAATTTCTAGCGCGAGCGTTGGCGCAGCGACTCGGTCTTCCTTGCCGAGCATTGTTTAAGCGTAC
TCGTGCTACTCGTTCGCAACGGGGTATGGATCGCCGGCAACGACAACGTAATTTACGTGGCGCATTTACGCTGACGAAAG
GCGTGACTGAACTTCAATCCGTCGCGATTGTTGATGATGTAGTGACGACAGGGAGTACTGTGCAGCAATTATGCAAATTA
CTACTTGATGCTGGAGTTAAAAGTGTTGATATTTACTGTATCTGCCGTACTCCTGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
56.667 |
100 |
0.57 |
| comF | Vibrio campbellii strain DS40M4 |
53.216 |
95.531 |
0.508 |
| comF | Haemophilus influenzae 86-028NP |
36.667 |
100 |
0.369 |
| comF | Haemophilus influenzae Rd KW20 |
36.667 |
100 |
0.369 |