Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   A6J87_RS04495 Genome accession   NZ_CP020451
Coordinates   901012..903570 (-) Length   852 a.a.
NCBI ID   WP_037599425.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 896012..908570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS04465 (A6J87_04445) ruvA 896516..897106 (-) 591 WP_080611619.1 Holliday junction branch migration protein RuvA Machinery gene
  A6J87_RS04470 (A6J87_04450) - 897264..897485 (-) 222 WP_037597288.1 hypothetical protein -
  A6J87_RS04475 (A6J87_04455) hexB 897616..899553 (-) 1938 WP_080611621.1 DNA mismatch repair endonuclease MutL Machinery gene
  A6J87_RS04480 (A6J87_04460) - 899605..899910 (-) 306 WP_070575143.1 hypothetical protein -
  A6J87_RS04485 (A6J87_04465) - 900089..900526 (+) 438 WP_037599421.1 LytTR family DNA-binding domain-containing protein -
  A6J87_RS04490 (A6J87_04470) - 900523..900978 (+) 456 WP_037599423.1 DUF3021 domain-containing protein -
  A6J87_RS04495 (A6J87_04475) hexA 901012..903570 (-) 2559 WP_037599425.1 DNA mismatch repair protein MutS Machinery gene
  A6J87_RS04500 (A6J87_04480) - 903563..903922 (-) 360 WP_080611622.1 YlbF family regulator -
  A6J87_RS04505 (A6J87_04485) argR 903922..904350 (-) 429 WP_192573915.1 arginine repressor -
  A6J87_RS04510 (A6J87_04490) argS 904505..906196 (+) 1692 WP_080611625.1 arginine--tRNA ligase -
  A6J87_RS04515 (A6J87_04495) purB 907073..908371 (-) 1299 WP_080611627.1 adenylosuccinate lyase -

Sequence


Protein


Download         Length: 852 a.a.        Molecular weight: 95682.90 Da        Isoelectric Point: 4.6570

>NTDB_id=186744 A6J87_RS04495 WP_037599425.1 901012..903570(-) (hexA) [Streptococcus salivarius strain FDAARGOS_259]
MAKEKISPGMQQYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHSAQAYIDVLV
EMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGTVVDSSKPDNANNFLVAIDKVGSRFGLAYMDVSTGEFFATELDDFSS
VCSEIQNLKAREVVVGYDLPEVDEQVLVKQLNLLLSKETEVYDDVHLIDTSLTDLESSVAGKLLQYVHRTQMRELSHLQK
AQHYEIKDYLQMSYATKSSLDLLENARTGKKHGSLFWLLDETKTAMGMRLLRTWIDRPLVNQTTITERQNIIQVFLDNFF
ERSDLTESLKGVYDIERLASRVSFGKANPKDLIQLGHTLAQVPVIKAILESFNDDALSRLLQELDALPELESLIRSAIDP
DAPATITEGGIIRAGFDETLDKYRKVMSEGTSWIADIEAKEREASGITTLKIDYNRKDGYYFHVTNSNLSLVPDHFFRKA
TLKNSERFGTAELAKIEGEMLEAREKSSTLEYDIFMRVREQVERYIDRLQFLAKAIATVDVLQSLAVTAETNHYVRPVFN
DEHRIVIDQGRHAVVEKVMGVQEYIPNTITFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGSYVPADSIDLPVFDA
IYTRIGAADDLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGAKTMFATHYHEL
TALSNNLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGLPADLLERADTILTQLEGDTVTIQPQEKVSPQ
EKPATETHVNEQISLFDDFTENPVLQELRDLDIYNMTPMQVMMAVADLKQKL

Nucleotide


Download         Length: 2559 bp        

>NTDB_id=186744 A6J87_RS04495 WP_037599425.1 901012..903570(-) (hexA) [Streptococcus salivarius strain FDAARGOS_259]
ATGGCTAAGGAAAAAATATCTCCAGGAATGCAGCAGTATTTGGATATCAAGGAAAATTATCCAGATGCTTTTTTGCTGTT
TCGGATGGGGGATTTTTACGAATTATTTTACGATGATGCCGTTAAGGCTGCTCAAATTTTGGAAATTAGCCTAACCAGTC
GTAATAAGAACGCAGATAATCCCATTCCTATGGCAGGTGTTCCTTATCATTCGGCTCAAGCCTATATTGATGTCTTGGTT
GAGATGGGCTACAAAGTAGCCATTGCTGAGCAGATGGAGGACCCTAAACAGGCTGTTGGCGTGGTTAAGCGTGAGGTAGT
TCAGGTTATCACGCCAGGGACAGTGGTTGACAGCTCTAAACCTGATAATGCCAACAATTTCTTAGTAGCCATTGACAAGG
TTGGAAGTCGATTCGGCCTGGCCTATATGGATGTGTCAACGGGTGAATTTTTTGCGACAGAGTTGGATGATTTCAGTTCA
GTTTGTAGTGAAATTCAGAACCTTAAGGCACGTGAAGTAGTCGTTGGGTATGATTTACCTGAAGTTGACGAACAAGTTTT
GGTCAAGCAACTCAACCTTCTACTCTCCAAGGAAACAGAGGTTTACGATGATGTCCACTTGATTGACACTAGCTTGACAG
ATTTGGAAAGCAGTGTGGCTGGTAAACTTCTCCAGTATGTGCACCGTACTCAGATGCGTGAGCTCAGTCATTTACAAAAG
GCTCAGCACTATGAGATTAAGGATTACCTGCAGATGTCCTATGCGACCAAGTCAAGTTTGGATTTACTAGAAAATGCTAG
AACGGGCAAGAAACACGGATCTCTTTTCTGGCTCTTGGATGAAACCAAGACAGCTATGGGAATGCGTCTCTTGCGAACTT
GGATTGATCGTCCTTTAGTGAATCAAACCACTATCACCGAGCGTCAGAATATTATCCAAGTTTTCTTGGACAATTTCTTT
GAGCGGAGTGACTTGACTGAGAGTCTAAAAGGTGTTTACGATATTGAACGCCTGGCCAGTCGTGTTTCCTTTGGCAAGGC
TAATCCAAAAGATTTGATTCAGCTAGGTCATACTTTGGCTCAAGTACCGGTGATTAAGGCGATTTTGGAGTCTTTTAATG
ACGATGCCTTGTCACGTCTTTTACAAGAGTTAGATGCTCTGCCAGAATTAGAGAGTTTGATTCGGTCGGCTATTGATCCT
GATGCCCCTGCAACCATTACAGAAGGTGGCATTATCCGTGCTGGTTTTGATGAGACCTTGGACAAGTATCGCAAGGTGAT
GAGTGAGGGAACCTCATGGATCGCAGATATCGAAGCTAAAGAACGTGAAGCGTCTGGTATTACAACACTAAAGATTGATT
ATAACCGTAAAGATGGTTATTACTTCCATGTGACCAACTCTAACCTTAGCTTGGTTCCTGACCATTTCTTCCGAAAGGCA
ACTCTGAAAAATTCAGAGCGCTTTGGAACTGCTGAGTTGGCTAAAATTGAAGGTGAGATGCTTGAGGCGCGTGAAAAATC
ATCAACGCTGGAATATGATATTTTCATGCGTGTCCGTGAGCAGGTTGAACGCTATATTGACCGTTTGCAATTTTTGGCTA
AGGCTATTGCGACAGTCGATGTGCTTCAGAGTTTGGCTGTTACAGCAGAGACTAATCATTATGTTCGTCCTGTGTTCAAT
GATGAGCATCGTATCGTTATTGATCAAGGTCGTCATGCGGTGGTTGAGAAGGTTATGGGCGTTCAAGAATACATTCCAAA
CACCATTACCTTTGACAGTCAGACCAATATTCAGCTCATCACAGGACCAAATATGAGTGGTAAATCCACCTATATGCGTC
AGTTAGCCTTGTCAGTAGTTATGGCTCAGATGGGGTCTTACGTGCCAGCAGATAGTATTGACTTGCCAGTTTTTGATGCT
ATCTATACACGTATTGGTGCTGCAGATGACCTGATTTCAGGGCAGTCGACCTTCATGGTTGAGATGATGGAGGCTAACCA
GGCTATTAAGCGGGCGACACCTAATTCCTTGATTATTTTTGATGAGTTGGGACGTGGGACAGCCACTTATGATGGTATGG
CTCTGGCCCAGTCTATTATTGAGTTTATTCATGACAAGGTGGGGGCTAAGACCATGTTTGCTACCCATTATCATGAGTTG
ACAGCCCTGTCAAACAATTTGACACACCTTGTCAACGTTCATGTGGCGACACTTGAAAAGGATGGTGAGGTGACTTTCCT
TCACAAGATTGTTGATGGCCCAGCTGACAAATCTTATGGTATTCATGTGGCTAAGATTGCAGGTTTACCAGCAGATTTAC
TGGAACGTGCTGACACCATCTTGACACAACTAGAGGGCGATACAGTTACCATCCAACCTCAGGAAAAGGTATCGCCTCAA
GAGAAGCCTGCCACTGAAACGCATGTCAACGAGCAAATCTCTCTCTTTGATGATTTTACTGAAAATCCAGTTCTTCAAGA
GTTACGTGATTTAGATATTTACAACATGACACCTATGCAAGTCATGATGGCTGTAGCAGATTTAAAACAGAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

74.178

100

0.742

  mutS Pseudomonas stutzeri strain ATCC 17587

35.954

100

0.365