Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   A6J85_RS00850 Genome accession   NZ_CP020450
Coordinates   153201..153803 (+) Length   200 a.a.
NCBI ID   WP_045505953.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 148201..158803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS00820 (A6J85_00815) luxS 148533..149015 (+) 483 WP_008808586.1 S-ribosylhomocysteine lyase Regulator
  A6J85_RS00825 (A6J85_00820) - 149072..150478 (-) 1407 WP_138109262.1 cell division site-positioning protein MapZ family protein -
  A6J85_RS00830 (A6J85_00825) - 150490..151647 (-) 1158 WP_060970917.1 class I SAM-dependent RNA methyltransferase -
  A6J85_RS00840 (A6J85_00835) gpsB 152188..152538 (-) 351 WP_012000085.1 cell division regulator GpsB -
  A6J85_RS00845 (A6J85_00840) - 152608..153135 (-) 528 WP_060970916.1 DUF1273 domain-containing protein -
  A6J85_RS00850 (A6J85_00845) recU 153201..153803 (+) 603 WP_045505953.1 Holliday junction resolvase RecU Machinery gene
  A6J85_RS00855 (A6J85_00850) pbp1a 153796..155934 (+) 2139 WP_082307137.1 penicillin-binding protein PBP1A -
  A6J85_RS00860 (A6J85_00855) pepC 156046..157380 (-) 1335 WP_082307138.1 aminopeptidase C -
  A6J85_RS00865 (A6J85_00860) - 157459..158019 (-) 561 WP_049553156.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23204.79 Da        Isoelectric Point: 9.7509

>NTDB_id=186594 A6J85_RS00850 WP_045505953.1 153201..153803(+) (recU) [Streptococcus gordonii strain FDAARGOS_257]
MVNYPHKLTSKNNIKKVKKETVDFANRGMTFEKMINDTNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYSGVYRGHYIDFEAKETRQKQSMPMKNFHAHQIEHMDQVLNQGGICFVLLHFSSLKETYLLPAPYLIEFYKIDKGG
KSMPLDYIQKHGYLIEQNILPSIPYLDIISKNLLGGHSNE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=186594 A6J85_RS00850 WP_045505953.1 153201..153803(+) (recU) [Streptococcus gordonii strain FDAARGOS_257]
ATGGTCAACTATCCGCATAAGCTTACATCTAAAAATAACATAAAAAAAGTGAAAAAAGAGACTGTCGATTTCGCTAATCG
GGGAATGACTTTTGAAAAAATGATTAACGACACCAATGATTATTACCTTAGTCGTGGATTAGCTGTTATTCATAAAAAGC
CTACACCCGTGCAAATTGTCAAAGTTGATTATCCTAAGCGAAGCCGTGCCAAGATTGTCGAGGCCTACTTTCGCCAAGCA
TCTACTACGGACTACTCGGGAGTTTACCGTGGGCATTACATTGATTTTGAAGCCAAGGAAACGCGGCAAAAGCAATCTAT
GCCTATGAAAAATTTTCATGCACACCAGATTGAACATATGGATCAAGTGCTCAATCAAGGCGGGATTTGCTTTGTCTTAC
TTCACTTTTCTAGTCTGAAGGAAACCTACCTCCTTCCTGCTCCCTACTTAATTGAGTTTTATAAGATTGATAAGGGTGGG
AAATCCATGCCCCTGGATTATATTCAGAAACATGGTTATCTCATTGAACAAAACATCCTTCCCAGCATACCTTATCTTGA
TATTATCTCAAAAAATTTACTAGGTGGTCACTCTAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.751

100

0.5

Multiple sequence alignment