Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   A6J85_RS00820 Genome accession   NZ_CP020450
Coordinates   148533..149015 (+) Length   160 a.a.
NCBI ID   WP_008808586.1    Uniprot ID   Q8KQK6
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 143533..154015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS00805 (A6J85_00800) rpoZ 145615..145929 (-) 315 WP_008808589.1 DNA-directed RNA polymerase subunit omega -
  A6J85_RS00810 (A6J85_00805) gmk 145954..146580 (-) 627 WP_045505966.1 guanylate kinase -
  A6J85_RS00815 (A6J85_00810) - 146695..148302 (-) 1608 WP_082307136.1 ribonuclease Y -
  A6J85_RS00820 (A6J85_00815) luxS 148533..149015 (+) 483 WP_008808586.1 S-ribosylhomocysteine lyase Regulator
  A6J85_RS00825 (A6J85_00820) - 149072..150478 (-) 1407 WP_138109262.1 cell division site-positioning protein MapZ family protein -
  A6J85_RS00830 (A6J85_00825) - 150490..151647 (-) 1158 WP_060970917.1 class I SAM-dependent RNA methyltransferase -
  A6J85_RS00840 (A6J85_00835) gpsB 152188..152538 (-) 351 WP_012000085.1 cell division regulator GpsB -
  A6J85_RS00845 (A6J85_00840) - 152608..153135 (-) 528 WP_060970916.1 DUF1273 domain-containing protein -
  A6J85_RS00850 (A6J85_00845) recU 153201..153803 (+) 603 WP_045505953.1 Holliday junction resolvase RecU Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17980.61 Da        Isoelectric Point: 5.2546

>NTDB_id=186593 A6J85_RS00820 WP_008808586.1 148533..149015(+) (luxS) [Streptococcus gordonii strain FDAARGOS_257]
MSKEVIVESFELDHTIVKAPYVRLIGEESGPKGDVISNFDIRLVQPNEDSIPTAGLHTIEHLLAMLIRKRIDGMIDCSPF
GCRTGFHMIMWGRHTPSEIAQVIKSCLEEIAETTTWEDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDNAFERHVI

Nucleotide


Download         Length: 483 bp        

>NTDB_id=186593 A6J85_RS00820 WP_008808586.1 148533..149015(+) (luxS) [Streptococcus gordonii strain FDAARGOS_257]
ATGTCTAAAGAAGTTATTGTTGAAAGTTTCGAGCTTGATCACACAATCGTTAAGGCCCCTTATGTACGACTCATTGGAGA
AGAAAGCGGACCAAAAGGAGATGTCATTTCCAATTTTGATATCCGACTTGTCCAGCCCAATGAAGATTCCATTCCAACTG
CAGGTCTCCATACCATTGAACACCTGCTGGCCATGCTTATCCGTAAACGCATTGATGGAATGATTGATTGCTCTCCTTTT
GGTTGTCGAACTGGTTTCCATATGATCATGTGGGGACGTCATACCCCATCCGAAATCGCCCAAGTGATCAAATCATGCCT
TGAAGAAATCGCTGAAACCACTACTTGGGAGGACGTCCCTGGAACTACGATTGAGTCTTGCGGAAACTATAAAGATCACA
GCCTTTTTTCTGCCAAGGAGTGGGCTAAATTAATCCTCAAACAAGGGATCTCAGATAACGCTTTCGAACGCCATGTCATT
TGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8KQK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

38.816

95

0.369