Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A6J72_RS08395 Genome accession   NZ_CP020433
Coordinates   1655845..1657503 (+) Length   552 a.a.
NCBI ID   WP_082312213.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1650845..1662503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS08365 (A6J72_08350) - 1651271..1652110 (+) 840 WP_105255950.1 NAD(P)H-hydrate dehydratase -
  A6J72_RS08370 (A6J72_08355) xseA 1652203..1653543 (+) 1341 WP_082312209.1 exodeoxyribonuclease VII large subunit -
  A6J72_RS08375 (A6J72_08360) - 1653521..1653733 (+) 213 WP_003068213.1 exodeoxyribonuclease VII small subunit -
  A6J72_RS08380 (A6J72_08365) - 1653730..1654632 (+) 903 WP_082312210.1 polyprenyl synthetase family protein -
  A6J72_RS08385 (A6J72_08370) - 1654598..1655413 (+) 816 WP_082312211.1 TlyA family RNA methyltransferase -
  A6J72_RS08390 (A6J72_08375) - 1655406..1655837 (+) 432 WP_082312212.1 arginine repressor -
  A6J72_RS08395 (A6J72_08380) recN 1655845..1657503 (+) 1659 WP_082312213.1 DNA repair protein RecN Machinery gene
  A6J72_RS08400 (A6J72_08385) - 1657814..1658545 (+) 732 WP_082312214.1 metallophosphoesterase -
  A6J72_RS08405 (A6J72_08390) - 1658608..1659579 (-) 972 WP_082312215.1 siderophore ABC transporter substrate-binding protein -
  A6J72_RS08410 (A6J72_08395) - 1659601..1660353 (-) 753 WP_003072001.1 ABC transporter ATP-binding protein -
  A6J72_RS08415 (A6J72_08400) - 1660354..1661316 (-) 963 WP_082312216.1 iron chelate uptake ABC transporter family permease subunit -
  A6J72_RS08420 (A6J72_08405) ceuB 1661309..1662262 (-) 954 WP_003072006.1 ABC transporter permease Machinery gene

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62730.98 Da        Isoelectric Point: 4.5319

>NTDB_id=186462 A6J72_RS08395 WP_082312213.1 1655845..1657503(+) (recN) [Streptococcus intermedius strain FDAARGOS_233]
MLLEISIKNFAIIEEVSLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGAPKAEIEGLFTIEQSKALIEIF
EQQGLDMTDELIIRREIFQNGRSISRINGQMVNLSVLRSVGQHLVDIHGQHDQEELMRSQLHIAMLDEFGDEVFFKLKAD
YQQTFDQYRQLRKQVITIQKNQEENKARIDMLEYQIAEIEEANLRAGEDLALNQERDKLLNHKQIADTLTNAYAMLDNEE
FSSLSNIRAAMNDMEAIEEYDVTYKEIATSLSESYYVLEDATKRLEDILDNMDFDGDRLLEVERRLDLIYSITRKYGGHV
DDVLAYLEQISKEYALLTGKNLSSNDLDQELRKLEKDLVSLAGRLSQGRHELAQQLEAEIQQELKDLYMEKANFRVQFTK
GKFSREGNEHVEFYISTNPGEDYKPLVKIASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAISDYQFFIEKISDEYSTVSTVRLLSDEERIEEIAKMLAGENVTEAALTQARELLKQ

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=186462 A6J72_RS08395 WP_082312213.1 1655845..1657503(+) (recN) [Streptococcus intermedius strain FDAARGOS_233]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGGTTTCTCTCAATTTTGAGCAAGGCATGACCGTTTT
GACAGGTGAAACGGGTGCTGGGAAGTCTATTATCATTGATGCTATGAATATGATGTTGGGAAGCCGAGCAACAACAGATG
TGATTCGTCATGGCGCGCCAAAAGCTGAGATTGAAGGACTGTTTACGATTGAACAGAGTAAAGCTTTGATTGAAATCTTT
GAGCAGCAAGGGCTTGATATGACAGATGAGTTGATTATTCGACGAGAAATTTTCCAAAACGGTCGCAGTATCAGCCGTAT
TAATGGTCAAATGGTCAATTTATCCGTTTTGCGATCGGTTGGACAGCATTTGGTGGATATTCATGGTCAGCACGACCAAG
AAGAGTTGATGCGTTCCCAGTTACATATTGCTATGTTGGACGAGTTTGGAGATGAAGTATTTTTTAAACTCAAAGCGGAT
TATCAGCAAACTTTTGATCAGTATCGTCAGTTGCGTAAGCAAGTTATAACGATTCAGAAGAATCAAGAAGAAAATAAGGC
GCGAATTGATATGCTGGAATATCAGATTGCAGAGATTGAGGAGGCTAATTTAAGAGCTGGCGAAGATTTGGCATTAAACC
AAGAACGCGATAAATTACTCAACCATAAGCAGATTGCAGACACTTTGACAAATGCCTACGCTATGCTGGATAATGAGGAA
TTCTCGAGTTTATCTAATATTCGAGCTGCCATGAATGATATGGAAGCCATCGAAGAGTACGATGTTACTTACAAAGAAAT
TGCGACTAGTCTTTCTGAGTCTTACTATGTACTGGAAGACGCAACAAAACGTTTGGAAGACATTCTAGATAACATGGATT
TTGATGGTGATCGTCTCTTAGAAGTTGAAAGGCGTCTAGATCTGATTTATAGCATTACTCGTAAATACGGTGGGCATGTG
GATGATGTGTTAGCTTATTTAGAGCAAATTTCTAAAGAATATGCGCTTCTGACTGGAAAGAATCTCTCATCAAATGATTT
GGATCAAGAGCTGAGAAAGCTAGAGAAAGATTTGGTCTCTCTAGCAGGTCGTCTGAGTCAGGGACGGCACGAATTAGCCC
AGCAATTAGAAGCAGAGATTCAGCAAGAATTAAAAGATCTCTATATGGAAAAGGCGAATTTTCGAGTTCAATTTACCAAA
GGAAAGTTTAGCCGCGAGGGAAATGAGCATGTTGAATTTTACATTTCGACTAATCCGGGCGAAGATTACAAACCGCTCGT
TAAGATTGCCTCTGGTGGTGAATTGTCACGTTTGATGTTGGCAATCAAGTCTGCTTTTTCTCGTAAAGAAGGCAAGACAA
GCATTGTTTTTGATGAAGTAGACACAGGCGTATCTGGACGTGTTGCGCAAGCTATTGCTCAGAAAATTCATAAAATTGGC
TCCAATGGACAAGTTCTTGCCATCTCGCACCTGCCACAAGTGATTGCCATTTCAGACTATCAATTTTTCATCGAGAAAAT
ATCAGATGAATATTCAACCGTTTCAACAGTTCGCTTGTTGTCTGATGAAGAGCGTATCGAAGAGATTGCTAAAATGTTAG
CGGGTGAAAATGTGACTGAAGCAGCTCTCACGCAGGCTAGAGAACTATTGAAACAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.211

100

0.457