Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   A6J72_RS08420 Genome accession   NZ_CP020433
Coordinates   1661309..1662262 (-) Length   317 a.a.
NCBI ID   WP_003072006.1    Uniprot ID   T1ZDK0
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1656309..1667262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS08400 (A6J72_08385) - 1657814..1658545 (+) 732 WP_082312214.1 metallophosphoesterase -
  A6J72_RS08405 (A6J72_08390) - 1658608..1659579 (-) 972 WP_082312215.1 siderophore ABC transporter substrate-binding protein -
  A6J72_RS08410 (A6J72_08395) - 1659601..1660353 (-) 753 WP_003072001.1 ABC transporter ATP-binding protein -
  A6J72_RS08415 (A6J72_08400) - 1660354..1661316 (-) 963 WP_082312216.1 iron chelate uptake ABC transporter family permease subunit -
  A6J72_RS08420 (A6J72_08405) ceuB 1661309..1662262 (-) 954 WP_003072006.1 ABC transporter permease Machinery gene
  A6J72_RS08425 (A6J72_08410) - 1662499..1663332 (+) 834 WP_003076577.1 DegV family protein -
  A6J72_RS08430 (A6J72_08415) - 1663461..1663736 (+) 276 WP_003036014.1 HU family DNA-binding protein -
  A6J72_RS08435 (A6J72_08420) - 1663904..1664365 (+) 462 WP_082312217.1 Fur family transcriptional regulator -
  A6J72_RS08440 (A6J72_08425) - 1664503..1665195 (+) 693 WP_003036126.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35337.17 Da        Isoelectric Point: 10.0791

>NTDB_id=186463 A6J72_RS08420 WP_003072006.1 1661309..1662262(-) (ceuB) [Streptococcus intermedius strain FDAARGOS_233]
MKQTKFLGILCLILAFISIMVGASSFSWHKLLSGETNTWLLFLESRLPRTISIILAGSSMSIAGLLMQSVTQNHFAAPST
IGTVNAAKFGMLLSLFFFPTANLAQKMLFAFLSSIFFTIIFIRFIRKLSFKEKWLLPLVGIIYSGVISAAAEILAYRFDL
VQSMTSWTQGSFAMIQTHQYEWLFLSFVILIAVWRLSATFTIMNLGEDASHNLGISFYQMEGLSLFLIALTTSVTMITVG
SLPFIGVIVPNIVRKFYGDHITRIKSITALTGAGLILICDIMSRMVIRPYEISVSLILGIFGSLTFIYLLWRGATHE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=186463 A6J72_RS08420 WP_003072006.1 1661309..1662262(-) (ceuB) [Streptococcus intermedius strain FDAARGOS_233]
ATGAAACAGACAAAATTTTTAGGAATTCTTTGTCTTATACTGGCTTTCATTTCAATTATGGTTGGTGCTAGCAGTTTTTC
TTGGCATAAACTACTTAGTGGTGAGACGAACACTTGGCTGTTGTTTTTAGAGTCACGCTTACCAAGGACCATTAGTATCA
TTTTGGCAGGTTCTAGCATGAGTATTGCAGGGCTTTTGATGCAATCTGTTACACAGAATCATTTTGCGGCGCCTAGTACA
ATTGGAACAGTAAATGCTGCAAAGTTCGGTATGCTTCTCAGCCTCTTCTTCTTTCCAACAGCAAATTTGGCTCAAAAAAT
GCTCTTCGCCTTTCTCTCTTCTATTTTTTTTACGATTATTTTTATTAGATTTATCAGAAAATTATCATTTAAGGAAAAAT
GGTTGCTGCCACTTGTCGGGATTATTTATAGTGGTGTCATTAGTGCAGCTGCTGAAATTCTTGCCTATCGTTTTGATCTA
GTGCAAAGTATGACATCGTGGACGCAAGGATCTTTTGCAATGATTCAGACACATCAATATGAGTGGCTTTTTTTGAGTTT
TGTTATTCTGATTGCTGTCTGGCGGTTGTCTGCTACTTTTACAATCATGAATCTAGGAGAAGATGCTAGCCATAATCTAG
GGATATCTTTTTATCAAATGGAAGGATTGAGCCTATTTCTCATTGCTCTCACAACCAGTGTGACAATGATTACAGTGGGC
TCACTTCCTTTCATAGGCGTGATTGTACCAAATATTGTGCGAAAATTTTATGGAGATCATATCACGCGCATCAAAAGTAT
TACTGCCCTGACAGGAGCAGGCTTGATTTTAATCTGTGATATTATGTCACGCATGGTGATCCGTCCCTACGAAATCTCAG
TTAGTTTGATTCTGGGAATTTTTGGAAGTTTAACATTCATTTATCTTTTATGGCGAGGTGCCACTCATGAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZDK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.5

98.423

0.369