Detailed information NTG0186424

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: A6J72_RS05485
• Genome accession: NZ_CP020433
• Coordinates: 1104332..1105429 (-)
• Length: 365 a.a.
• NCBI ID: WP_003075474.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain FDAARGOS_233
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1099332..1110429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J72_RS05470 (A6J72_05485)	galE	1099770..1100765 (+)	996	WP_278186952.1	UDP-glucose 4-epimerase GalE	-
A6J72_RS05475 (A6J72_05490)	trpS	1100847..1101872 (+)	1026	WP_003075477.1	tryptophan--tRNA ligase	-
A6J72_RS05480 (A6J72_05495)	guaB	1102010..1103491 (+)	1482	WP_082311952.1	IMP dehydrogenase	-
A6J72_RS05485 (A6J72_05500)	recF	1104332..1105429 (-)	1098	WP_003075474.1	DNA replication/repair protein RecF	Machinery gene
A6J72_RS05490 (A6J72_05505)	yaaA	1105431..1105811 (-)	381	WP_003075472.1	S4 domain-containing protein YaaA	-
A6J72_RS05495 (A6J72_05510)	yfmF	1105987..1107234 (+)	1248	WP_082311953.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
A6J72_RS05500 (A6J72_05515)	yfmH	1107234..1108529 (+)	1296	WP_009569718.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
A6J72_RS05505 (A6J72_05520)	rodZ	1108588..1109400 (+)	813	WP_009569717.1	cytoskeleton protein RodZ	-
A6J72_RS05510 (A6J72_05525)	pgsA	1109411..1109950 (+)	540	WP_003077406.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 42081.36 Da
• Isoelectric Point: 8.4364

>NTDB_id=186424 A6J72_RS05485 WP_003075474.1 1104332..1105429(-) (recF) [Streptococcus intermedius strain FDAARGOS_233]
MWLKNLQIQYFRNYKLTEIDFHPGLNIFLGENAQGKTNILEAIYFLALTRSHRTRSDKDLIYFSNDSLKISGQLAKETGN
ISLEIDLTPKGRTTKVNHLKQSKLSDYVGNMNVVLFAPEDLQLIKGTPALRRKFIDIELGQIKPIYLSDLSQYHHVLKQR
NAYLKAAPKIDETFLTVLDDQLVEFGCRVIQHRTEFLKKLEHFGQQKHLELSSNLENLTIKYCSSIPLSDPNKLKESFQI
ALRQSRSRDLFKKNTGIGPHRDDIAFYINNMNATFGSQGQHRSMVLSLKLAEIELMETVTKEKPILLLDDVMSELDNNRQ
LNLLETISQNIQTFITTTTLEHLKHLPSDIKIFSIHDGHFMENQV

Nucleotide

• Length: 1098 bp

>NTDB_id=186424 A6J72_RS05485 WP_003075474.1 1104332..1105429(-) (recF) [Streptococcus intermedius strain FDAARGOS_233]
ATGTGGTTAAAAAACTTACAAATTCAATATTTTCGCAATTATAAATTAACTGAAATAGATTTTCACCCTGGTCTCAATAT
TTTTTTAGGGGAAAACGCTCAAGGAAAAACAAATATTTTAGAAGCTATCTATTTTCTTGCGTTGACACGAAGTCATCGAA
CTCGTTCAGATAAAGATTTAATTTATTTTTCTAACGATTCTTTAAAAATTTCTGGACAACTTGCCAAAGAAACTGGGAAT
ATCTCTTTAGAAATTGACTTGACCCCTAAAGGAAGAACTACAAAGGTTAATCATTTAAAACAAAGTAAATTATCCGATTA
TGTTGGAAATATGAATGTTGTTCTATTTGCTCCAGAAGATTTACAACTGATTAAAGGGACACCAGCTCTTAGACGGAAAT
TTATCGACATAGAATTAGGGCAAATTAAACCAATCTATTTATCTGATTTATCACAATATCATCATGTTTTAAAACAACGA
AATGCTTATCTAAAGGCAGCCCCAAAAATAGATGAGACTTTTTTAACTGTCTTGGATGATCAGCTAGTAGAGTTTGGTTG
CCGTGTTATACAACATCGGACAGAGTTTCTCAAAAAACTAGAACACTTTGGTCAACAAAAACATTTAGAGCTTTCAAGTA
ATTTAGAAAACTTAACCATTAAGTATTGCTCTTCTATTCCACTTTCAGATCCCAATAAATTGAAAGAATCTTTCCAAATT
GCATTAAGACAAAGCCGTAGTAGAGATTTATTTAAAAAAAATACTGGAATTGGTCCCCATCGAGATGATATCGCTTTTTA
TATTAATAACATGAATGCCACTTTTGGTAGTCAAGGACAACATCGAAGTATGGTCCTATCTCTTAAGTTGGCAGAGATTG
AACTTATGGAAACTGTGACCAAAGAAAAACCAATTCTTCTACTTGACGATGTTATGAGCGAACTTGACAACAATCGTCAA
TTGAATTTGCTTGAAACTATCTCTCAAAATATACAAACATTTATCACAACAACAACTTTAGAACATCTGAAACATTTGCC
TTCTGATATTAAAATTTTCTCAATTCATGATGGACATTTTATGGAAAATCAAGTGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-356)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	72.346	98.082	0.71
recF	Bacillus subtilis subsp. subtilis str. 168	47.159	96.438	0.455