Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A6B40_RS08780 | Genome accession | NZ_CP016226 |
| Coordinates | 1872123..1872677 (+) | Length | 184 a.a. |
| NCBI ID | WP_025247310.1 | Uniprot ID | - |
| Organism | Mannheimia varigena strain 177 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1867123..1877677
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6B40_RS08770 (A6B40_08680) | - | 1870235..1871014 (+) | 780 | WP_025216720.1 | MerR family transcriptional regulator | - |
| A6B40_RS08775 (A6B40_08685) | - | 1871220..1871909 (-) | 690 | WP_025216721.1 | CPBP family intramembrane glutamic endopeptidase | - |
| A6B40_RS08780 (A6B40_08690) | pilF | 1872123..1872677 (+) | 555 | WP_025247310.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A6B40_RS08785 (A6B40_08695) | - | 1872678..1875002 (+) | 2325 | WP_176672153.1 | Tex family protein | - |
| A6B40_RS08790 (A6B40_08700) | - | 1875131..1875373 (+) | 243 | WP_112110588.1 | hypothetical protein | - |
| A6B40_RS08795 (A6B40_08705) | - | 1875384..1875881 (+) | 498 | WP_176672154.1 | DUF805 domain-containing protein | - |
| A6B40_RS08800 (A6B40_08710) | - | 1875865..1876416 (+) | 552 | WP_176672155.1 | hypothetical protein | - |
| A6B40_RS08805 (A6B40_08715) | - | 1876431..1877252 (-) | 822 | WP_176672340.1 | SDR family NAD(P)-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20866.63 Da Isoelectric Point: 7.6840
>NTDB_id=186403 A6B40_RS08780 WP_025247310.1 1872123..1872677(+) (pilF) [Mannheimia varigena strain 177]
MFAKYLKNITACITLFLLAACSSTPETVSETEFNRSEAVKARINLALAYLEQNDFPKAKQNIDKALAHDPNDYLPHSVLA
YYYQQTADAQNAEKAYQQALKLSQNRPDVRNNYGTFLCKQGQFQQAYQQFEQAVASPKPYYHQADSLENIILCAKKEPNP
QKVAETLIELEKLDKPRATLLKGN
MFAKYLKNITACITLFLLAACSSTPETVSETEFNRSEAVKARINLALAYLEQNDFPKAKQNIDKALAHDPNDYLPHSVLA
YYYQQTADAQNAEKAYQQALKLSQNRPDVRNNYGTFLCKQGQFQQAYQQFEQAVASPKPYYHQADSLENIILCAKKEPNP
QKVAETLIELEKLDKPRATLLKGN
Nucleotide
Download Length: 555 bp
>NTDB_id=186403 A6B40_RS08780 WP_025247310.1 1872123..1872677(+) (pilF) [Mannheimia varigena strain 177]
ATGTTTGCAAAATATTTGAAAAATATCACCGCTTGTATCACGCTATTTTTGTTAGCTGCGTGTTCCTCTACTCCCGAAAC
CGTTTCAGAAACTGAATTTAACCGCTCGGAAGCGGTGAAAGCTCGTATAAACTTAGCTCTTGCTTATTTGGAGCAGAACG
ATTTCCCCAAAGCGAAACAGAATATTGACAAAGCCCTCGCTCATGACCCGAACGATTACCTGCCCCACTCGGTGCTTGCC
TACTATTATCAGCAAACTGCCGATGCACAAAATGCCGAAAAAGCCTATCAACAAGCCTTGAAATTAAGCCAAAACCGCCC
TGATGTGCGGAATAATTACGGCACTTTTTTATGTAAACAAGGTCAATTTCAGCAGGCTTATCAACAATTTGAACAGGCAG
TGGCAAGTCCGAAGCCTTATTATCACCAAGCGGATAGTTTAGAGAACATCATTTTATGTGCGAAAAAAGAGCCTAATCCG
CAAAAAGTTGCCGAAACACTTATTGAGCTTGAGAAGCTGGACAAACCTCGAGCCACGTTACTGAAAGGAAATTAA
ATGTTTGCAAAATATTTGAAAAATATCACCGCTTGTATCACGCTATTTTTGTTAGCTGCGTGTTCCTCTACTCCCGAAAC
CGTTTCAGAAACTGAATTTAACCGCTCGGAAGCGGTGAAAGCTCGTATAAACTTAGCTCTTGCTTATTTGGAGCAGAACG
ATTTCCCCAAAGCGAAACAGAATATTGACAAAGCCCTCGCTCATGACCCGAACGATTACCTGCCCCACTCGGTGCTTGCC
TACTATTATCAGCAAACTGCCGATGCACAAAATGCCGAAAAAGCCTATCAACAAGCCTTGAAATTAAGCCAAAACCGCCC
TGATGTGCGGAATAATTACGGCACTTTTTTATGTAAACAAGGTCAATTTCAGCAGGCTTATCAACAATTTGAACAGGCAG
TGGCAAGTCCGAAGCCTTATTATCACCAAGCGGATAGTTTAGAGAACATCATTTTATGTGCGAAAAAAGAGCCTAATCCG
CAAAAAGTTGCCGAAACACTTATTGAGCTTGAGAAGCTGGACAAACCTCGAGCCACGTTACTGAAAGGAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
63.102 |
100 |
0.641 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
48.256 |
93.478 |
0.451 |