Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A6J30_RS06245 Genome accession   NZ_CP020427
Coordinates   1293734..1294462 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain FDAARGOS_191     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1288734..1299462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J30_RS06230 (A6J30_06010) clpC 1289169..1291742 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  A6J30_RS06235 (A6J30_06015) pgeF 1291890..1292618 (-) 729 WP_005477884.1 peptidoglycan editing factor PgeF -
  A6J30_RS06240 (A6J30_06020) rluD 1292620..1293597 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A6J30_RS06245 (A6J30_06025) comL 1293734..1294462 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  A6J30_RS06250 (A6J30_06030) - 1294597..1296078 (+) 1482 WP_005477934.1 lytic transglycosylase F -
  A6J30_RS06255 (A6J30_06035) raiA 1296409..1296735 (+) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  A6J30_RS06260 (A6J30_06040) pheA 1296979..1298157 (+) 1179 WP_005468591.1 prephenate dehydratase -
  A6J30_RS06265 (A6J30_06045) yjjX 1298182..1298715 (+) 534 WP_021451172.1 inosine/xanthosine triphosphatase -
  A6J30_RS06270 (A6J30_06050) trpR 1298764..1299075 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=186309 A6J30_RS06245 WP_005460312.1 1293734..1294462(+) (comL) [Vibrio parahaemolyticus strain FDAARGOS_191]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=186309 A6J30_RS06245 WP_005460312.1 1293734..1294462(+) (comL) [Vibrio parahaemolyticus strain FDAARGOS_191]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACTCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405