Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   A6J51_RS09880 Genome accession   NZ_CP020423
Coordinates   1701277..1701954 (+) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis strain FDAARGOS_212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1696277..1706954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J51_RS09860 (A6J51_09565) leuD 1697082..1697723 (-) 642 WP_002224506.1 3-isopropylmalate dehydratase small subunit -
  A6J51_RS09865 (A6J51_09570) - 1697785..1698039 (-) 255 WP_002213442.1 hypothetical protein -
  A6J51_RS09870 (A6J51_09575) leuC 1698136..1699545 (-) 1410 WP_002213443.1 3-isopropylmalate dehydratase large subunit -
  A6J51_RS09875 (A6J51_09580) gshA 1699805..1701154 (+) 1350 WP_002249661.1 glutamate--cysteine ligase -
  A6J51_RS09880 (A6J51_09585) ysxA/radC 1701277..1701954 (+) 678 WP_002222553.1 DNA repair protein RadC Machinery gene
  A6J51_RS09885 (A6J51_09590) - 1702027..1702752 (+) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  A6J51_RS14650 - 1702775..1702903 (-) 129 WP_009347251.1 hypothetical protein -
  A6J51_RS09890 (A6J51_09595) - 1702905..1704185 (+) 1281 WP_002225276.1 CAP domain-containing protein -
  A6J51_RS09895 (A6J51_09600) hflX 1704190..1705368 (+) 1179 WP_002220933.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=186266 A6J51_RS09880 WP_002222553.1 1701277..1701954(+) (ysxA/radC) [Neisseria meningitidis strain FDAARGOS_212]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=186266 A6J51_RS09880 WP_002222553.1 1701277..1701954(+) (ysxA/radC) [Neisseria meningitidis strain FDAARGOS_212]
ATGAGCATCAAGCAATGGCCGGAGGGGGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTCGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGTTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGTGAAATTGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378