Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A6B44_RS02500 | Genome accession | NZ_CP016180 |
| Coordinates | 539603..540166 (-) | Length | 187 a.a. |
| NCBI ID | WP_090922847.1 | Uniprot ID | A0A1H7Z6L9 |
| Organism | Pasteurella skyensis strain 95A1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 534603..545166
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6B44_RS02480 (A6B44_02450) | mutH | 534739..535410 (-) | 672 | WP_090922851.1 | DNA mismatch repair endonuclease MutH | - |
| A6B44_RS02485 (A6B44_02455) | rhlB | 535605..536819 (+) | 1215 | WP_090922850.1 | ATP-dependent RNA helicase RhlB | - |
| A6B44_RS02490 (A6B44_02460) | fbp | 536875..537876 (-) | 1002 | WP_090922849.1 | class 1 fructose-bisphosphatase | - |
| A6B44_RS02495 (A6B44_02465) | - | 538145..539548 (+) | 1404 | WP_090922848.1 | Do family serine endopeptidase | - |
| A6B44_RS02500 (A6B44_02470) | pilF | 539603..540166 (-) | 564 | WP_090922847.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A6B44_RS02505 (A6B44_02475) | - | 540187..541362 (-) | 1176 | WP_090922846.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| A6B44_RS02510 (A6B44_02480) | greA | 541560..542036 (-) | 477 | WP_090922845.1 | transcription elongation factor GreA | - |
| A6B44_RS02515 (A6B44_02485) | - | 542254..543741 (+) | 1488 | WP_090922844.1 | helicase HerA-like C-terminal domain-containing protein | - |
| A6B44_RS02520 (A6B44_02490) | - | 544202..544849 (+) | 648 | WP_246253099.1 | transposase | - |
Sequence
Protein
Download Length: 187 a.a. Molecular weight: 21516.63 Da Isoelectric Point: 9.2090
>NTDB_id=186102 A6B44_RS02500 WP_090922847.1 539603..540166(-) (pilF) [Pasteurella skyensis strain 95A1]
MKFAKCYQHLTACFLIITLAGCVSSKADFSINRTEAMKARLNLALGYLKENNFPKAKLNIDKAINHNNQDYLPYSVLAYY
YQQTGDVTKAMQTYQQAVTLSQKFAKNHQARPDVLNNYGTFLCKQGKFKQAYDQFEQAFESEQPYYHQADTLENIILCAK
SEKNLTQMNKALVLLENIDKSRAERLK
MKFAKCYQHLTACFLIITLAGCVSSKADFSINRTEAMKARLNLALGYLKENNFPKAKLNIDKAINHNNQDYLPYSVLAYY
YQQTGDVTKAMQTYQQAVTLSQKFAKNHQARPDVLNNYGTFLCKQGKFKQAYDQFEQAFESEQPYYHQADTLENIILCAK
SEKNLTQMNKALVLLENIDKSRAERLK
Nucleotide
Download Length: 564 bp
>NTDB_id=186102 A6B44_RS02500 WP_090922847.1 539603..540166(-) (pilF) [Pasteurella skyensis strain 95A1]
ATGAAATTTGCAAAATGTTATCAACATCTTACCGCTTGTTTTTTAATTATAACCTTAGCAGGTTGTGTGTCTTCTAAGGC
AGATTTTTCGATCAATCGTACAGAAGCAATGAAAGCAAGGCTAAATCTTGCGTTAGGATATTTGAAAGAAAACAATTTTC
CTAAGGCAAAGTTAAACATTGATAAGGCGATTAATCATAATAATCAAGATTACTTACCTTATTCTGTATTGGCTTATTAT
TATCAACAAACAGGTGATGTGACAAAAGCGATGCAAACCTATCAACAAGCGGTCACATTAAGCCAAAAATTTGCAAAAAA
TCATCAAGCTCGTCCTGATGTATTAAATAATTATGGTACATTTTTGTGTAAACAAGGAAAATTTAAGCAAGCTTATGATC
AGTTTGAACAGGCGTTCGAGAGCGAGCAACCTTATTATCATCAAGCGGATACCTTAGAAAATATTATTCTTTGTGCGAAA
AGTGAAAAAAATCTCACTCAAATGAATAAGGCATTGGTTTTATTAGAAAATATAGATAAATCAAGAGCGGAGAGGTTAAA
ATAA
ATGAAATTTGCAAAATGTTATCAACATCTTACCGCTTGTTTTTTAATTATAACCTTAGCAGGTTGTGTGTCTTCTAAGGC
AGATTTTTCGATCAATCGTACAGAAGCAATGAAAGCAAGGCTAAATCTTGCGTTAGGATATTTGAAAGAAAACAATTTTC
CTAAGGCAAAGTTAAACATTGATAAGGCGATTAATCATAATAATCAAGATTACTTACCTTATTCTGTATTGGCTTATTAT
TATCAACAAACAGGTGATGTGACAAAAGCGATGCAAACCTATCAACAAGCGGTCACATTAAGCCAAAAATTTGCAAAAAA
TCATCAAGCTCGTCCTGATGTATTAAATAATTATGGTACATTTTTGTGTAAACAAGGAAAATTTAAGCAAGCTTATGATC
AGTTTGAACAGGCGTTCGAGAGCGAGCAACCTTATTATCATCAAGCGGATACCTTAGAAAATATTATTCTTTGTGCGAAA
AGTGAAAAAAATCTCACTCAAATGAATAAGGCATTGGTTTTATTAGAAAATATAGATAAATCAAGAGCGGAGAGGTTAAA
ATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
59.677 |
99.465 |
0.594 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.328 |
94.652 |
0.439 |