Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6E01_RS06300 Genome accession   NZ_CP016177
Coordinates   1339138..1339659 (+) Length   173 a.a.
NCBI ID   WP_065209843.1    Uniprot ID   A0AAN0XUG3
Organism   Vibrio breoganii strain FF50     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1334138..1344659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E01_RS06275 (A6E01_06275) - 1334510..1334932 (+) 423 WP_065209839.1 ATP-binding protein -
  A6E01_RS06280 (A6E01_06280) - 1334951..1335961 (+) 1011 WP_065209840.1 adenosine deaminase -
  A6E01_RS06285 (A6E01_06285) - 1335962..1336966 (-) 1005 WP_065209841.1 helix-turn-helix transcriptional regulator -
  A6E01_RS06290 (A6E01_06290) - 1337076..1337426 (+) 351 WP_017027242.1 hypothetical protein -
  A6E01_RS06295 (A6E01_06295) rmuC 1337439..1339040 (+) 1602 WP_065209842.1 DNA recombination protein RmuC -
  A6E01_RS06300 (A6E01_06300) ssb 1339138..1339659 (+) 522 WP_065209843.1 single-stranded DNA-binding protein Machinery gene
  A6E01_RS06305 (A6E01_06305) - 1339930..1340520 (+) 591 WP_065209844.1 SH3 domain-containing protein -
  A6E01_RS06310 (A6E01_06310) - 1340646..1341722 (-) 1077 WP_065209845.1 threonine aldolase family protein -
  A6E01_RS06315 (A6E01_06315) - 1341792..1342016 (-) 225 WP_017027247.1 SgrR family transcriptional regulator -
  A6E01_RS06320 (A6E01_06320) sbcD 1342787..1344013 (+) 1227 WP_065209846.1 exonuclease subunit SbcD -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18585.29 Da        Isoelectric Point: 6.7282

>NTDB_id=186080 A6E01_RS06300 WP_065209843.1 1339138..1339659(+) (ssb) [Vibrio breoganii strain FF50]
MASRGVNKVIIVGNLGTDPELRHFSNGNAVANFTVATSETWQDKATGQQREKTEWHRISVMGKLAEIAGNHLRKGSQVYI
EGQLQTRKWQDKSGQERYTTEVVVQGFNGTMQMLGGRQQGEQSSPGNQYAGGSNQGNQFSGGNAPANAPTNPGQSGAPGG
FTPSPDDYDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=186080 A6E01_RS06300 WP_065209843.1 1339138..1339659(+) (ssb) [Vibrio breoganii strain FF50]
ATGGCATCACGCGGCGTAAACAAAGTCATCATCGTAGGAAATTTAGGCACTGATCCTGAACTGCGTCACTTCTCAAACGG
CAATGCAGTCGCCAACTTTACGGTGGCAACATCTGAGACTTGGCAGGATAAAGCGACCGGTCAGCAGCGAGAAAAAACTG
AGTGGCACCGCATCTCTGTCATGGGTAAGCTGGCTGAGATTGCGGGAAATCACCTGCGAAAGGGCTCTCAAGTGTATATT
GAAGGGCAATTGCAAACCCGCAAGTGGCAGGATAAATCAGGCCAAGAGCGCTACACCACAGAAGTCGTCGTGCAAGGCTT
CAACGGCACCATGCAAATGCTAGGTGGCCGTCAGCAGGGCGAGCAAAGCAGCCCAGGCAATCAATATGCTGGTGGTTCAA
ACCAAGGCAATCAGTTTAGTGGGGGCAATGCCCCTGCTAATGCACCGACTAACCCAGGTCAATCGGGCGCACCAGGTGGA
TTTACCCCAAGCCCTGATGACTATGATGATATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60.556

100

0.63
  ssb Glaesserella parasuis strain SC1401

50.27

100

0.538
  ssb Neisseria gonorrhoeae MS11

45.198

100

0.462
  ssb Neisseria meningitidis MC58

45.198

100

0.462

Multiple sequence alignment