Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A6E01_RS06210 Genome accession   NZ_CP016177
Coordinates   1319520..1320935 (-) Length   471 a.a.
NCBI ID   WP_065209831.1    Uniprot ID   A0AAN0XUC3
Organism   Vibrio breoganii strain FF50     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1314520..1325935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E01_RS06185 (A6E01_06185) ihfA 1315701..1316003 (+) 303 WP_017027221.1 integration host factor subunit alpha -
  A6E01_RS06190 (A6E01_06190) purT 1316108..1317283 (-) 1176 WP_065209827.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  A6E01_RS06195 (A6E01_06195) cdd 1317434..1318327 (-) 894 WP_065209828.1 cytidine deaminase -
  A6E01_RS06200 (A6E01_06200) - 1318475..1319152 (-) 678 WP_065209829.1 CidB/LrgB family autolysis modulator -
  A6E01_RS06205 (A6E01_06205) - 1319154..1319516 (-) 363 WP_065209830.1 CidA/LrgA family protein -
  A6E01_RS06210 (A6E01_06210) sbcB 1319520..1320935 (-) 1416 WP_065209831.1 exodeoxyribonuclease I Machinery gene
  A6E01_RS06215 (A6E01_06215) - 1321208..1321585 (-) 378 WP_017027227.1 nuclear transport factor 2 family protein -
  A6E01_RS06220 (A6E01_06220) - 1321718..1323088 (-) 1371 WP_017027228.1 L-cystine transporter -
  A6E01_RS06225 (A6E01_06225) - 1323281..1323940 (-) 660 WP_065209832.1 NAD-dependent epimerase/dehydratase family protein -
  A6E01_RS06230 (A6E01_06230) - 1324038..1325063 (+) 1026 WP_017027230.1 succinylglutamate desuccinylase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 54150.64 Da        Isoelectric Point: 5.7187

>NTDB_id=186079 A6E01_RS06210 WP_065209831.1 1319520..1320935(-) (sbcB) [Vibrio breoganii strain FF50]
MHTDQPTFFFFDYETWGVSPAKDRPCQFAGVRTDADLNVIGEPLVIYCRPPADYLPNPEAALVTGITPQKAMNEGLSEPE
FITAIHNEMSRPNTCTLGYNSVRFDDEVTRYTCYRNFIEPYEWSYKNGNSRWDLLDVMRACHALRPEGVNWPENDEGNTS
FRLEHLSVANGIEHSNAHDAMADVYATIEMAKKVKQSQPKLFDFFYKHRGKQKLNALVDIVNMTPLVHVSGMLSTEHQKT
ALIAPIGWTPIKALITIDLTQDITPLIELSADEIKDRLYTKRSDLEEGQLPIPVKLVHLNKCPILAPLGVLTADAIERTQ
IDKEECLRKQQLLQQHPQIREKLDAVFAENREFPTSPNIEEQLYNGFFSPSDKAQMRIIRDAKPEVLGSLDIQVTDPRIA
PLLFNYRARNFFHTLTDQEQKRWLLHCRDKFEQELPNYMLNLENLGAQHQGDEHKMKILKAIYHYVEQLVS

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=186079 A6E01_RS06210 WP_065209831.1 1319520..1320935(-) (sbcB) [Vibrio breoganii strain FF50]
ATGCACACGGACCAACCCACATTCTTTTTCTTTGATTACGAGACTTGGGGAGTCAGTCCTGCAAAAGATAGACCGTGTCA
GTTTGCTGGTGTGCGCACCGATGCCGACCTAAATGTCATTGGAGAGCCGCTAGTCATCTATTGCAGACCCCCTGCAGATT
ATCTACCCAATCCTGAAGCGGCACTTGTGACCGGTATTACGCCGCAAAAGGCGATGAATGAAGGCTTATCAGAGCCAGAA
TTCATCACTGCGATTCACAATGAAATGAGTCGCCCAAATACCTGTACCCTTGGCTATAACAGCGTACGCTTTGACGATGA
AGTCACCCGCTACACTTGCTATCGTAATTTTATCGAACCTTATGAGTGGAGCTACAAAAACGGCAACTCTAGATGGGATC
TACTGGATGTGATGCGCGCCTGTCATGCACTGCGACCGGAAGGGGTAAACTGGCCAGAAAATGATGAAGGCAATACCAGT
TTTCGATTAGAGCATTTATCGGTTGCAAACGGCATTGAGCACAGCAACGCCCACGATGCTATGGCCGATGTCTATGCCAC
GATTGAGATGGCAAAAAAGGTTAAGCAGAGCCAGCCTAAGCTATTTGATTTCTTCTACAAACATAGAGGAAAACAAAAGC
TAAACGCCCTTGTGGACATTGTAAACATGACCCCTCTGGTTCACGTATCGGGCATGCTCAGCACTGAGCACCAGAAAACC
GCTCTAATTGCTCCTATTGGTTGGACACCGATTAAGGCGTTAATCACCATTGATCTTACTCAAGACATTACGCCGCTAAT
TGAGCTTTCAGCCGATGAAATCAAAGACAGACTTTATACCAAACGCAGCGACCTTGAAGAGGGTCAGTTGCCTATCCCAG
TAAAACTGGTGCATCTTAACAAGTGCCCCATTCTTGCGCCTTTAGGTGTGTTGACTGCTGACGCTATTGAGCGCACGCAG
ATCGACAAAGAAGAGTGCTTGAGAAAACAGCAGTTGCTGCAGCAACATCCGCAGATTCGAGAAAAACTCGATGCGGTGTT
TGCAGAAAATCGAGAGTTTCCAACTAGCCCAAACATCGAAGAGCAGCTGTACAACGGCTTTTTCTCTCCATCAGATAAGG
CGCAGATGCGCATTATCCGAGATGCAAAGCCTGAGGTATTAGGTTCTCTTGATATTCAAGTTACAGATCCTCGCATCGCT
CCTTTGCTGTTTAACTACCGAGCTCGAAATTTCTTTCATACTCTGACCGATCAAGAGCAGAAGCGATGGCTACTCCACTG
TCGTGATAAGTTTGAGCAAGAACTGCCTAATTACATGTTAAACCTAGAAAATCTTGGTGCGCAGCATCAAGGGGATGAGC
ATAAGATGAAGATCCTCAAGGCCATCTACCACTACGTTGAACAGTTGGTTTCTTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(10-187)

Exonuclease C-terminal (Exonuc_X-T_C)

(209-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

66.88

99.363

0.665

Multiple sequence alignment