Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   A6E01_RS04165 Genome accession   NZ_CP016177
Coordinates   882543..883946 (+) Length   467 a.a.
NCBI ID   WP_065209630.1    Uniprot ID   A0AAN1CRI1
Organism   Vibrio breoganii strain FF50     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 877543..888946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E01_RS04145 (A6E01_04145) rsxB 877589..878176 (-) 588 WP_017027034.1 electron transport complex subunit RsxB -
  A6E01_RS04150 (A6E01_04150) rsxA 878176..878757 (-) 582 WP_065209629.1 electron transport complex subunit RsxA -
  A6E01_RS04160 (A6E01_04160) uvrB 880496..882523 (+) 2028 WP_170875130.1 excinuclease ABC subunit UvrB -
  A6E01_RS04165 (A6E01_04165) luxO 882543..883946 (+) 1404 WP_065209630.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  A6E01_RS04170 (A6E01_04170) - 883939..884298 (+) 360 WP_017243445.1 Hpt domain-containing protein -
  A6E01_RS04175 (A6E01_04175) yvcK 884329..885213 (-) 885 WP_065209631.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  A6E01_RS04180 (A6E01_04180) moaA 885543..886532 (+) 990 WP_017029750.1 GTP 3',8-cyclase MoaA -
  A6E01_RS04185 (A6E01_04185) moaB 886584..887096 (+) 513 WP_017029749.1 molybdenum cofactor biosynthesis protein B -
  A6E01_RS04190 (A6E01_04190) moaC 887103..887582 (+) 480 WP_065209632.1 cyclic pyranopterin monophosphate synthase MoaC -
  A6E01_RS04195 (A6E01_04195) moaD 887579..887824 (+) 246 WP_017031046.1 molybdopterin synthase sulfur carrier subunit -
  A6E01_RS04200 (A6E01_04200) moaE 887826..888275 (+) 450 WP_017031045.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51917.54 Da        Isoelectric Point: 5.8629

>NTDB_id=186077 A6E01_RS04165 WP_065209630.1 882543..883946(+) (luxO) [Vibrio breoganii strain FF50]
MSKNKIANKQLRLLMVEDTLSVATLYQTYLSTLNLDIQIVSSGEAALAHLEQQPIDLMLLDLRLPDMTGMDVLKKVRARA
PKVPVIFMTAHGSIEVAVEAMRAGAHDFLIKPCEADQLRITVSKAIHQTQNGKHDVLGEINQYQGFIGSSASMQKVYKTI
DSAASSKASIFITGESGTGKEVCAEAIHSVSNRSTEPFIALNCAAIPKDLIESELFGHVKGAFTGAATDRKGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTYQKVGSSKLSAVDVRFVCATNKDPWQEVKRGRFREDLYYRLYVIPLHLPPLRDR
GDDIVEIAYSLLGFTSLEESKQFGKFNEEVLRHFVAYPWPGNVRQLQNVIRNIVVLNEGEEVKMDMLPSPLDRFRVASYS
EEVIDQFIDPEHNDDSKKIVPLALVERRTIERAIELCGGSIPAAATELDVSASTLYRKLEKWEKGRG

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=186077 A6E01_RS04165 WP_065209630.1 882543..883946(+) (luxO) [Vibrio breoganii strain FF50]
ATGTCAAAAAATAAAATAGCAAACAAGCAGTTAAGATTGTTGATGGTAGAGGACACGCTTTCAGTGGCGACCTTATACCA
GACCTATCTATCAACATTGAATTTGGATATTCAAATCGTTTCTAGTGGTGAGGCGGCATTAGCACATCTAGAGCAGCAGC
CCATCGATCTTATGCTGCTGGACTTACGCTTGCCTGATATGACAGGAATGGACGTACTGAAAAAGGTGCGGGCAAGAGCA
CCTAAGGTCCCGGTTATCTTCATGACAGCACATGGCTCTATCGAGGTAGCCGTTGAAGCGATGAGAGCCGGTGCCCATGA
CTTTTTGATTAAGCCATGTGAGGCGGATCAGCTCCGCATTACAGTATCTAAAGCCATACACCAAACTCAAAATGGCAAGC
ACGATGTTCTTGGCGAGATAAACCAATATCAAGGCTTTATTGGCTCTAGCGCTAGCATGCAAAAAGTCTATAAAACCATA
GACTCGGCTGCATCGAGTAAGGCGAGTATCTTTATTACTGGCGAGAGCGGAACAGGTAAAGAGGTGTGTGCTGAAGCTAT
CCACTCTGTGAGCAATCGAAGCACTGAACCCTTTATTGCGCTGAACTGTGCCGCTATTCCTAAAGACCTGATTGAAAGTG
AGCTTTTTGGTCATGTAAAAGGCGCCTTTACTGGGGCTGCAACGGATCGAAAAGGGGCGGCAGAGTTGGCTGATGGCGGT
ACGTTATTTTTGGATGAATTGTGTGAGATGGATTTGGACTTACAAACCAAGTTACTGCGCTTTATTCAGACTGGTACCTA
TCAAAAAGTCGGTTCATCAAAGCTCAGTGCAGTCGATGTGCGTTTTGTGTGTGCGACCAACAAAGACCCTTGGCAAGAAG
TGAAAAGAGGGCGTTTTCGTGAGGATCTTTATTACCGTCTTTACGTTATCCCATTGCATCTGCCACCTTTAAGAGACAGA
GGGGATGACATCGTCGAGATTGCCTACTCTTTGCTAGGTTTTACTTCCCTTGAAGAGAGTAAGCAGTTTGGCAAATTCAA
CGAAGAGGTGCTTCGTCACTTCGTTGCCTATCCTTGGCCGGGGAATGTGCGCCAGTTGCAAAATGTAATTCGTAATATTG
TGGTTCTCAACGAAGGCGAAGAGGTGAAAATGGACATGCTACCTTCACCCTTAGACCGTTTCAGAGTGGCTTCCTATTCC
GAAGAGGTTATCGATCAGTTCATAGACCCTGAGCACAATGACGACAGCAAAAAGATCGTTCCGTTGGCGTTAGTGGAGCG
CAGAACCATAGAAAGAGCCATAGAACTGTGTGGTGGCAGTATACCTGCCGCCGCTACTGAACTGGATGTCAGTGCATCAA
CACTCTACAGAAAACTAGAAAAATGGGAGAAAGGGCGTGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-120)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

68

96.36

0.655
  pilR Pseudomonas aeruginosa PAK

37.389

96.788

0.362

Multiple sequence alignment