Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6J43_RS08300 Genome accession   NZ_CP020415
Coordinates   1425556..1426221 (-) Length   221 a.a.
NCBI ID   WP_050170995.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_204     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1420556..1431221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J43_RS08265 (A6J43_08300) dut 1421206..1421658 (-) 453 WP_003702446.1 dUTP diphosphatase -
  A6J43_RS13440 - 1421824..1422532 (+) 709 Protein_1435 AzlC family ABC transporter permease -
  A6J43_RS08275 (A6J43_08310) - 1422529..1422837 (+) 309 WP_050170999.1 AzlD family protein -
  A6J43_RS08280 (A6J43_08315) pilL 1422907..1423380 (-) 474 WP_192941126.1 PilX family type IV pilin Machinery gene
  A6J43_RS08285 (A6J43_08320) pilK 1423382..1423978 (-) 597 WP_082277593.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J43_RS08290 (A6J43_08325) pilJ 1423957..1424919 (-) 963 WP_082277595.1 PilW family protein Machinery gene
  A6J43_RS08295 (A6J43_08330) pilV/pilI 1424916..1425524 (-) 609 WP_082277597.1 type IV pilus modification protein PilV Regulator
  A6J43_RS08300 (A6J43_08335) pilH 1425556..1426221 (-) 666 WP_050170995.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J43_RS08310 (A6J43_08340) dnaB 1426529..1427935 (-) 1407 WP_047920816.1 replicative DNA helicase -
  A6J43_RS08315 (A6J43_08350) - 1428098..1428679 (+) 582 WP_003698180.1 superoxide dismutase -
  A6J43_RS08325 (A6J43_08360) - 1428909..1429418 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6J43_RS08330 (A6J43_08365) - 1429745..1430077 (-) 333 WP_003687908.1 hypothetical protein -
  A6J43_RS08335 (A6J43_08370) cysT 1430263..1431101 (+) 839 Protein_1446 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24699.21 Da        Isoelectric Point: 9.4068

>NTDB_id=185836 A6J43_RS08300 WP_050170995.1 1425556..1426221(-) (pilH) [Neisseria gonorrhoeae strain FDAARGOS_204]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVN
NQCDFGKKGQGMLAFGDKNDNKAYDGDTKDVFLRNVVLNDDINDKRINYTFNHIAFGQIQPTAERVVWTFNQNGTFGYLP
DQNLKNNSKFVYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDARAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=185836 A6J43_RS08300 WP_050170995.1 1425556..1426221(-) (pilH) [Neisseria gonorrhoeae strain FDAARGOS_204]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCAAC
AACCAGTGCGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTCAAATACAGCCGACTGCCGAACGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCC
GATCAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATGCGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

90.045

100

0.9

Multiple sequence alignment