Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A6J43_RS08285 Genome accession   NZ_CP020415
Coordinates   1423382..1423978 (-) Length   198 a.a.
NCBI ID   WP_082277593.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_204     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418382..1428978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J43_RS08255 (A6J43_08290) yaaA 1419006..1419785 (-) 780 WP_003692836.1 peroxide stress protein YaaA -
  A6J43_RS08260 (A6J43_08295) dapC 1419941..1421128 (-) 1188 WP_082277589.1 succinyldiaminopimelate transaminase -
  A6J43_RS08265 (A6J43_08300) dut 1421206..1421658 (-) 453 WP_003702446.1 dUTP diphosphatase -
  A6J43_RS13440 - 1421824..1422532 (+) 709 Protein_1435 AzlC family ABC transporter permease -
  A6J43_RS08275 (A6J43_08310) - 1422529..1422837 (+) 309 WP_050170999.1 AzlD family protein -
  A6J43_RS08280 (A6J43_08315) pilL 1422907..1423380 (-) 474 WP_192941126.1 PilX family type IV pilin Machinery gene
  A6J43_RS08285 (A6J43_08320) pilK 1423382..1423978 (-) 597 WP_082277593.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J43_RS08290 (A6J43_08325) pilJ 1423957..1424919 (-) 963 WP_082277595.1 PilW family protein Machinery gene
  A6J43_RS08295 (A6J43_08330) pilV/pilI 1424916..1425524 (-) 609 WP_082277597.1 type IV pilus modification protein PilV Regulator
  A6J43_RS08300 (A6J43_08335) pilH 1425556..1426221 (-) 666 WP_050170995.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J43_RS08310 (A6J43_08340) dnaB 1426529..1427935 (-) 1407 WP_047920816.1 replicative DNA helicase -
  A6J43_RS08315 (A6J43_08350) - 1428098..1428679 (+) 582 WP_003698180.1 superoxide dismutase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21557.35 Da        Isoelectric Point: 6.3622

>NTDB_id=185833 A6J43_RS08285 WP_082277593.1 1423382..1423978(-) (pilK) [Neisseria gonorrhoeae strain FDAARGOS_204]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNVNEESFGNIVVQGTSTVEAVKRSCPANSASLCIDNQGVEYKKGTGNVSKMPRYIIE
YLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 597 bp        

>NTDB_id=185833 A6J43_RS08285 WP_082277593.1 1423382..1423978(-) (pilK) [Neisseria gonorrhoeae strain FDAARGOS_204]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATGTTAATGA
AGAGTCTTTTGGCAATATCGTGGTGCAAGGCACGTCCACCGTTGAGGCCGTGAAGCGTTCTTGCCCTGCAAATTCTGCCA
GCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGCTATATTATCGAA
TATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

93.103

100

0.955