Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   A6J43_RS08290 Genome accession   NZ_CP020415
Coordinates   1423957..1424919 (-) Length   320 a.a.
NCBI ID   WP_082277595.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FDAARGOS_204     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1418957..1429919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J43_RS08255 (A6J43_08290) yaaA 1419006..1419785 (-) 780 WP_003692836.1 peroxide stress protein YaaA -
  A6J43_RS08260 (A6J43_08295) dapC 1419941..1421128 (-) 1188 WP_082277589.1 succinyldiaminopimelate transaminase -
  A6J43_RS08265 (A6J43_08300) dut 1421206..1421658 (-) 453 WP_003702446.1 dUTP diphosphatase -
  A6J43_RS13440 - 1421824..1422532 (+) 709 Protein_1435 AzlC family ABC transporter permease -
  A6J43_RS08275 (A6J43_08310) - 1422529..1422837 (+) 309 WP_050170999.1 AzlD family protein -
  A6J43_RS08280 (A6J43_08315) pilL 1422907..1423380 (-) 474 WP_192941126.1 PilX family type IV pilin Machinery gene
  A6J43_RS08285 (A6J43_08320) pilK 1423382..1423978 (-) 597 WP_082277593.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J43_RS08290 (A6J43_08325) pilJ 1423957..1424919 (-) 963 WP_082277595.1 PilW family protein Machinery gene
  A6J43_RS08295 (A6J43_08330) pilV/pilI 1424916..1425524 (-) 609 WP_082277597.1 type IV pilus modification protein PilV Regulator
  A6J43_RS08300 (A6J43_08335) pilH 1425556..1426221 (-) 666 WP_050170995.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J43_RS08310 (A6J43_08340) dnaB 1426529..1427935 (-) 1407 WP_047920816.1 replicative DNA helicase -
  A6J43_RS08315 (A6J43_08350) - 1428098..1428679 (+) 582 WP_003698180.1 superoxide dismutase -
  A6J43_RS08325 (A6J43_08360) - 1428909..1429418 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence


Protein


Download         Length: 320 a.a.        Molecular weight: 35332.14 Da        Isoelectric Point: 8.9759

>NTDB_id=185834 A6J43_RS08290 WP_082277595.1 1423957..1424919(-) (pilJ) [Neisseria gonorrhoeae strain FDAARGOS_204]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESPNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAAISKPGKQILNLEDVKKELQIVSQDKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 963 bp        

>NTDB_id=185834 A6J43_RS08290 WP_082277595.1 1423957..1424919(-) (pilJ) [Neisseria gonorrhoeae strain FDAARGOS_204]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTCCAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGGCAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGCAGATTGT
GAGTCAGGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCGGTAGTGATGCCAAGATTGCCG
CTTCTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTT
TGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

87.188

100

0.872