Detailed information NTG0185705

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: A6J62_RS16350
• Genome accession: NZ_CP020408
• Coordinates: 2322578..2323252 (-)
• Length: 224 a.a.
• NCBI ID: WP_000053959.1
• Uniprot ID: Q9KVC9
• Organism: Vibrio cholerae strain FDAARGOS_223
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2317578..2328252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J62_RS16315 (A6J62_16175)	-	2317758..2318537 (+)	780	WP_000042983.1	glycosyltransferase family 2 protein	-
A6J62_RS16320 (A6J62_16180)	-	2318599..2319636 (-)	1038	WP_000735619.1	glycosyltransferase family 9 protein	-
A6J62_RS16325 (A6J62_16185)	coaD	2319747..2320241 (+)	495	WP_000078888.1	pantetheine-phosphate adenylyltransferase	-
A6J62_RS16330 (A6J62_16190)	mutM	2320338..2321147 (-)	810	WP_001114647.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
A6J62_RS16335 (A6J62_16195)	-	2321157..2321639 (-)	483	WP_001266257.1	hypothetical protein	-
A6J62_RS16340 (A6J62_16200)	rpmG	2321866..2322033 (-)	168	WP_001051801.1	50S ribosomal protein L33	-
A6J62_RS16345 (A6J62_16205)	rpmB	2322047..2322283 (-)	237	WP_000091952.1	50S ribosomal protein L28	-
A6J62_RS16350 (A6J62_16210)	radC	2322578..2323252 (-)	675	WP_000053959.1	DNA repair protein RadC	Machinery gene
A6J62_RS16355 (A6J62_16215)	-	2323364..2325043 (-)	1680	WP_000953041.1	methyl-accepting chemotaxis protein	-
A6J62_RS16360 (A6J62_16220)	coaBC	2325226..2326425 (+)	1200	WP_001190972.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
A6J62_RS16365 (A6J62_16225)	-	2326491..2326628 (-)	138	WP_001889830.1	hypothetical protein	-
A6J62_RS16370 (A6J62_16230)	slmA	2326584..2327174 (+)	591	WP_000918350.1	nucleoid occlusion factor SlmA	-
A6J62_RS16375 (A6J62_16235)	-	2327180..2328127 (+)	948	WP_000076197.1	Kdo(2)-lipid IV(A) acyltransferase	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25246.07 Da
• Isoelectric Point: 7.9636

>NTDB_id=185705 A6J62_RS16350 WP_000053959.1 2322578..2323252(-) (radC) [Vibrio cholerae strain FDAARGOS_223]
MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Nucleotide

• Length: 675 bp

>NTDB_id=185705 A6J62_RS16350 WP_000053959.1 2322578..2323252(-) (radC) [Vibrio cholerae strain FDAARGOS_223]
ATGAGCCTAAAACAGTTACCCACCGAATCCATGCCGCGCGAAAAATTGCTGCAACGCGGTCCACAATCATTAAGTGATGC
GGAATTGCTGGCGATTTTCCTACGTACAGGCACCCAAGGCATGAACGTGCTCGCCTTAGCTGATCTGCTGCTGCGCGATT
TTGGATCGCTGCGCGCACTGTTTTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTT
CAATTACAAGCGGTATTGGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCCCTCACCAGTCCGCA
GCAAACCAAACTTTATTTATCGAGCGTGCTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC
ATCGTGTCATTCGTGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCACGAGAAGTGGTTAAGCGG
GCGCTGCACCATAATGCCGCTGCGGTAATACTGGCACACAACCACCCATCGGGTGTTGCGGAACCGAGTCAAGCCGATCG
AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGTGTGCTGGATCATTTTGTCGTCGGTGATGGGG
AAGTGGTCTCTTTTGCTGAACGTGGCTGGATATAG

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (4-79)

• RadC-like JAB domain (RadC) (104-222)

3D structure

• AlphaFold DB: Q9KVC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	53.704	96.429	0.518
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	37.946	100	0.379