Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J54_RS15300 Genome accession   NZ_CP020402
Coordinates   465936..466334 (+) Length   132 a.a.
NCBI ID   WP_079888326.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460936..471334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS02670 (A6J54_02600) - 461343..462296 (-) 954 WP_021437874.1 D-2-hydroxyacid dehydrogenase -
  A6J54_RS02675 (A6J54_02605) - 462418..462549 (+) 132 Protein_433 DUF2061 domain-containing protein -
  A6J54_RS15295 - 462703..462789 (+) 87 Protein_434 DUF2061 domain-containing protein -
  A6J54_RS02685 (A6J54_02615) - 462867..463196 (+) 330 WP_014581682.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  A6J54_RS02690 (A6J54_02620) - 463225..463476 (+) 252 Protein_436 pilin -
  A6J54_RS02700 (A6J54_02625) - 463607..464005 (+) 399 Protein_437 pilin -
  A6J54_RS14540 - 464715..464840 (+) 126 Protein_438 pilin -
  A6J54_RS02715 (A6J54_02645) - 464976..465983 (-) 1008 WP_080541925.1 IS5 family transposase -
  A6J54_RS15300 (A6J54_02650) pilE 465936..466334 (+) 399 WP_079888326.1 pilin Machinery gene
  A6J54_RS02725 (A6J54_02655) - 466327..466673 (+) 347 Protein_441 pilin -
  A6J54_RS02730 (A6J54_02660) - 466804..467202 (+) 399 Protein_442 pilin -
  A6J54_RS02735 (A6J54_02665) - 467410..467697 (+) 288 Protein_443 pilin -
  A6J54_RS02745 (A6J54_02675) - 468016..468408 (+) 393 Protein_444 pilin -
  A6J54_RS02755 (A6J54_02680) - 468683..469084 (+) 402 Protein_445 pilin -
  A6J54_RS02765 (A6J54_02690) - 469523..469948 (+) 426 Protein_446 pilin -
  A6J54_RS02775 (A6J54_02695) - 470055..470447 (+) 393 Protein_447 pilin -
  A6J54_RS14545 - 470608..470976 (+) 369 Protein_448 pilin -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 13936.50 Da        Isoelectric Point: 7.8498

>NTDB_id=185648 A6J54_RS15300 WP_079888326.1 465936..466334(+) (pilE) [Neisseria meningitidis strain FDAARGOS_215]
MFGNHGLGGLLEEGAHGKSPKCHGGNLGDFGEFCKGLGKYVKEVTVANGVVTATMLSSGVNKEIQGRKLSLWAKRQDGSV
KWFCGQPVTRDKADADADAVTADTAAANKKIDTNHSHEPTSRHSRESGNDGI

Nucleotide


Download         Length: 399 bp        

>NTDB_id=185648 A6J54_RS15300 WP_079888326.1 465936..466334(+) (pilE) [Neisseria meningitidis strain FDAARGOS_215]
GTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGGAAGAAGGTGCTCATGGAAAATCCCCTAAATGTCATGGTGGGAATTT
AGGGGATTTTGGGGAATTTTGCAAAGGTCTCGGAAAATATGTTAAGGAAGTTACAGTCGCAAACGGCGTCGTTACCGCCA
CAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAAGGCAGAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTA
AAATGGTTCTGCGGACAGCCGGTTACGCGCGACAAAGCCGACGCCGACGCCGACGCCGTTACCGCCGACACCGCCGCCGC
CAACAAGAAGATCGACACCAATCATTCCCACGAACCTACATCCCGTCATTCCCGCGAAAGTGGGAATGACGGGATTTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(41-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

69.231

59.091

0.409
  pilE Neisseria gonorrhoeae MS11

67.949

59.091

0.402