Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A9I66_RS08430 Genome accession   NZ_CP016072
Coordinates   1766303..1767190 (-) Length   295 a.a.
NCBI ID   WP_065354381.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain NA45 isolate UWMNA45     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1761303..1772190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9I66_RS08415 (A9I66_08415) xerC 1761808..1762719 (-) 912 WP_373366352.1 tyrosine recombinase XerC -
  A9I66_RS08420 (A9I66_08420) trmFO 1762819..1764123 (-) 1305 WP_014614087.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  A9I66_RS08425 (A9I66_08425) topA 1764151..1766219 (-) 2069 Protein_1677 type I DNA topoisomerase -
  A9I66_RS08430 (A9I66_08430) dprA 1766303..1767190 (-) 888 WP_065354381.1 DNA-processing protein DprA Machinery gene
  A9I66_RS08435 (A9I66_08435) sucD 1767425..1768330 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  A9I66_RS08440 (A9I66_08440) sucC 1768352..1769518 (-) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  A9I66_RS08445 (A9I66_08445) - 1769780..1770055 (-) 276 WP_015729039.1 hypothetical protein -
  A9I66_RS08450 (A9I66_08450) - 1770147..1770932 (-) 786 WP_065354382.1 ribonuclease HII -
  A9I66_RS08455 (A9I66_08455) ylqF 1770925..1771797 (-) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33677.21 Da        Isoelectric Point: 8.4682

>NTDB_id=185641 A9I66_RS08430 WP_065354381.1 1766303..1767190(-) (dprA) [Staphylococcus pseudintermedius strain NA45 isolate UWMNA45]
MKQLLLLLLYAGFSTQQIQYYYPKLCTLTGNLPQRIQAFKSMLSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLCEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=185641 A9I66_RS08430 WP_065354381.1 1766303..1767190(-) (dprA) [Staphylococcus pseudintermedius strain NA45 isolate UWMNA45]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATTCAATACTATTACCCTAAACTTTGTAC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCGATGCTTTCACACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCTCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTATGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.345

98.305

0.495
  dprA Staphylococcus aureus N315

50

98.305

0.492

Multiple sequence alignment