Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   A6J54_RS08930 Genome accession   NZ_CP020402
Coordinates   1537812..1538489 (+) Length   225 a.a.
NCBI ID   WP_002213447.1    Uniprot ID   Q9JZI3
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1532812..1543489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS08905 (A6J54_08630) - 1533091..1533552 (-) 462 WP_002237965.1 YhcH/YjgK/YiaL family protein -
  A6J54_RS08910 (A6J54_08635) leuD 1533617..1534258 (-) 642 WP_080542421.1 3-isopropylmalate dehydratase small subunit -
  A6J54_RS08915 (A6J54_08640) - 1534320..1534574 (-) 255 WP_080542181.1 hypothetical protein -
  A6J54_RS08920 (A6J54_08645) leuC 1534671..1536080 (-) 1410 WP_002213443.1 3-isopropylmalate dehydratase large subunit -
  A6J54_RS08925 (A6J54_08650) gshA 1536340..1537689 (+) 1350 WP_002213445.1 glutamate--cysteine ligase -
  A6J54_RS15245 - 1537663..1537785 (-) 123 WP_255294323.1 hypothetical protein -
  A6J54_RS08930 (A6J54_08655) ysxA/radC 1537812..1538489 (+) 678 WP_002213447.1 RadC family protein Machinery gene
  A6J54_RS08935 (A6J54_08660) - 1538562..1539287 (+) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  A6J54_RS15250 - 1539310..1539438 (-) 129 WP_009347251.1 hypothetical protein -
  A6J54_RS08940 (A6J54_08665) - 1539440..1540720 (+) 1281 WP_002225276.1 CAP domain-containing protein -
  A6J54_RS08945 (A6J54_08670) hflX 1540725..1541903 (+) 1179 WP_080542182.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24939.75 Da        Isoelectric Point: 5.3782

>NTDB_id=185622 A6J54_RS08930 WP_002213447.1 1537812..1538489(+) (ysxA/radC) [Neisseria meningitidis strain FDAARGOS_215]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVCSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=185622 A6J54_RS08930 WP_002213447.1 1537812..1538489(+) (ysxA/radC) [Neisseria meningitidis strain FDAARGOS_215]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCTGTTCGTTCAGACAGCTCGGGTTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JZI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378