Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   A6J53_RS12025 Genome accession   NZ_CP020401
Coordinates   2005476..2006153 (-) Length   225 a.a.
NCBI ID   WP_002220931.1    Uniprot ID   A1KU78
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2000476..2011153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS12010 (A6J53_11650) hflX 2002062..2003240 (-) 1179 WP_002220933.1 GTPase HflX -
  A6J53_RS12015 (A6J53_11655) - 2003245..2004525 (-) 1281 WP_002256657.1 CAP domain-containing protein -
  A6J53_RS15965 - 2004527..2004655 (+) 129 WP_009347251.1 hypothetical protein -
  A6J53_RS12020 (A6J53_11660) - 2004678..2005403 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  A6J53_RS12025 (A6J53_11665) ysxA/radC 2005476..2006153 (-) 678 WP_002220931.1 RadC family protein Machinery gene
  A6J53_RS12030 (A6J53_11670) gshA 2006276..2007625 (-) 1350 WP_002256658.1 glutamate--cysteine ligase -
  A6J53_RS12035 (A6J53_11675) leuC 2007885..2009294 (+) 1410 WP_002224507.1 3-isopropylmalate dehydratase large subunit -
  A6J53_RS12040 (A6J53_11680) - 2009391..2009645 (+) 255 WP_002213442.1 hypothetical protein -
  A6J53_RS12045 (A6J53_11685) leuD 2009707..2010348 (+) 642 WP_002224506.1 3-isopropylmalate dehydratase small subunit -
  A6J53_RS12050 (A6J53_11690) - 2010413..2010874 (+) 462 WP_002237965.1 YhcH/YjgK/YiaL family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24992.80 Da        Isoelectric Point: 5.7262

>NTDB_id=185562 A6J53_RS12025 WP_002220931.1 2005476..2006153(-) (ysxA/radC) [Neisseria meningitidis strain FDAARGOS_214]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=185562 A6J53_RS12025 WP_002220931.1 2005476..2006153(-) (ysxA/radC) [Neisseria meningitidis strain FDAARGOS_214]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAGTTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCCGTTCGTTCAGACAGCTCGGGTTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KU78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378