Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   A9404_RS08210 Genome accession   NZ_CP016027
Coordinates   1881578..1882981 (+) Length   467 a.a.
NCBI ID   WP_066100082.1    Uniprot ID   A0A191ZHJ5
Organism   Halothiobacillus diazotrophicus strain LS2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1876578..1887981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9404_RS08195 (A9404_08195) ppk1 1877428..1879503 (+) 2076 WP_066100073.1 polyphosphate kinase 1 -
  A9404_RS13420 (A9404_08200) - 1879638..1879883 (+) 246 WP_066100076.1 PP0621 family protein -
  A9404_RS08205 (A9404_08205) - 1879859..1881535 (+) 1677 WP_197490311.1 PAS domain-containing sensor histidine kinase -
  A9404_RS08210 (A9404_08210) pilR 1881578..1882981 (+) 1404 WP_066100082.1 sigma-54 dependent transcriptional regulator Regulator
  A9404_RS08215 (A9404_08215) phoR 1882988..1884403 (-) 1416 WP_156521288.1 phosphate regulon sensor histidine kinase PhoR -
  A9404_RS08220 (A9404_08220) phoB 1884499..1885191 (-) 693 WP_156521289.1 phosphate regulon transcriptional regulator PhoB -
  A9404_RS08225 (A9404_08225) nadC 1885443..1886276 (+) 834 WP_066100085.1 carboxylating nicotinate-nucleotide diphosphorylase -
  A9404_RS08230 (A9404_08230) - 1886302..1886634 (-) 333 WP_066100088.1 hypothetical protein -
  A9404_RS08235 (A9404_08235) - 1886790..1887134 (+) 345 WP_066100091.1 ArsC family reductase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51321.77 Da        Isoelectric Point: 5.3762

>NTDB_id=185424 A9404_RS08210 WP_066100082.1 1881578..1882981(+) (pilR) [Halothiobacillus diazotrophicus strain LS2]
MPACLIIDDEPDIRTLIALALGRDGITCHLAADLAEARQLLDAAGEELDFCLTDMRLPDGDGLDLLEEIRDTFPTLPVAV
ITAHGQVDAAVRALKAGAFDFVSKPIEQLVLKRLVRDALKRRAADATTEPDDTPISRTEAPVDASPLLGESRAMQALRMT
IDKVARSQAPVFIHGESGTGKELVARQIHARSGRADGPFVPVNCGAIPADLIESELFGHKKGAFTGAHQSNSGLFRAAEG
GTLLLDEVAELPLSLQVKLLRVIQERKVRPVGEHSEIPVDVRILSASHQDLAAAVREGRFRHDLFYRLNVIELKVPPLRD
RLDDLPILCRHILDKLAAREQCAPMDITPDALSWLASLSFEGNIRELENRLERAMALSDGDRLTRKVLSDSLMTPAAHLP
AQDAHLEIPGLPSLNFGQAPHNALEAEEQRMVLNALEDTRWNRSEAARQLGMTLRQLRYRLSKWGVE

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=185424 A9404_RS08210 WP_066100082.1 1881578..1882981(+) (pilR) [Halothiobacillus diazotrophicus strain LS2]
ATGCCCGCCTGCCTAATCATTGACGACGAACCGGACATCCGCACCCTGATCGCCCTTGCGCTCGGCCGCGACGGTATCAC
CTGCCATTTGGCGGCCGATCTCGCAGAAGCGCGTCAACTGCTCGACGCAGCGGGTGAGGAACTCGATTTCTGCCTGACGG
ACATGCGGCTGCCGGATGGGGATGGTCTCGATCTGCTGGAGGAAATTCGCGACACATTTCCGACCCTCCCGGTCGCCGTC
ATCACCGCGCATGGCCAGGTGGATGCCGCCGTTCGCGCCCTCAAGGCGGGGGCATTCGATTTCGTTTCCAAACCGATCGA
GCAGCTGGTACTGAAACGCCTGGTGCGCGATGCGCTCAAACGCCGGGCTGCTGATGCCACGACAGAACCCGACGACACCC
CCATCAGTCGGACCGAAGCACCGGTCGATGCCTCGCCACTGCTGGGCGAGTCACGCGCCATGCAGGCGCTGCGCATGACC
ATCGACAAGGTTGCCCGCTCCCAGGCACCGGTGTTCATCCATGGCGAATCCGGAACGGGCAAGGAACTGGTTGCCCGTCA
GATTCACGCGCGCAGTGGTCGTGCAGATGGACCGTTCGTCCCGGTGAACTGCGGCGCCATCCCCGCAGACCTGATCGAAA
GCGAGCTGTTCGGTCACAAGAAAGGCGCCTTCACGGGCGCCCACCAATCGAACAGCGGTCTGTTCCGGGCGGCCGAGGGG
GGGACACTGCTGCTGGACGAGGTTGCTGAGCTGCCGCTGAGTCTCCAGGTGAAGTTGTTGCGCGTGATTCAGGAGCGGAA
AGTACGCCCCGTCGGCGAGCACAGCGAGATTCCCGTCGACGTCCGCATCCTCTCGGCCTCCCACCAGGATCTTGCAGCCG
CCGTGCGCGAAGGCCGTTTCCGCCACGATCTCTTCTACCGCCTGAACGTCATCGAACTCAAGGTCCCGCCCCTGAGAGAT
CGCCTCGACGATTTGCCGATCCTCTGCCGACACATTCTCGACAAGCTCGCGGCCCGGGAGCAGTGCGCACCGATGGACAT
CACGCCTGACGCCCTCAGCTGGCTCGCTTCGCTTTCGTTCGAGGGAAATATCCGTGAGCTGGAAAACCGGCTCGAGCGCG
CGATGGCGCTCAGTGACGGTGATCGGCTGACCCGAAAAGTCCTGTCGGACTCCCTCATGACCCCCGCCGCACACTTGCCC
GCCCAGGATGCGCATCTGGAAATCCCCGGCCTGCCCAGCCTCAACTTTGGACAGGCCCCGCACAATGCCCTCGAGGCGGA
AGAACAGCGCATGGTTCTCAATGCCCTTGAAGATACGCGGTGGAATCGCAGCGAGGCCGCCCGGCAACTGGGCATGACCC
TCCGGCAGCTGCGCTATCGGCTGAGCAAATGGGGCGTGGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(147-313)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Response regulator receiver domain (Response_reg)

(5-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A191ZHJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.79

99.786

0.527
  pilR Acinetobacter baumannii strain A118

46.849

100

0.478

Multiple sequence alignment