Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSK2_RS16750 Genome accession   NZ_CP020367
Coordinates   3247613..3248248 (-) Length   211 a.a.
NCBI ID   WP_021480575.1    Uniprot ID   -
Organism   Bacillus subtilis strain GQJK2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3242613..3253248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS16730 (BSK2_16730) yvzF 3243670..3243855 (-) 186 WP_003221676.1 YvzF family protein -
  BSK2_RS16735 (BSK2_16735) gerAA 3243973..3245421 (+) 1449 WP_033884692.1 spore germination receptor protein GerAA -
  BSK2_RS16740 (BSK2_16740) gerAB 3245390..3246487 (+) 1098 WP_029318427.1 spore germination receptor protein GerAB -
  BSK2_RS16745 (BSK2_16745) gerAC 3246484..3247605 (+) 1122 WP_080529768.1 spore germination receptor protein GerAC -
  BSK2_RS16750 (BSK2_16750) vraR 3247613..3248248 (-) 636 WP_021480575.1 two-component system response regulator LiaR Regulator
  BSK2_RS16755 (BSK2_16755) liaS 3248226..3249308 (-) 1083 WP_003244464.1 two-component system sensor histidine kinase LiaS -
  BSK2_RS16760 (BSK2_16760) liaF 3249305..3250030 (-) 726 WP_003228510.1 LiaRS two-component regulatory system accessory protein LiaF -
  BSK2_RS16765 (BSK2_16765) liaG 3250064..3250936 (-) 873 WP_032726837.1 DUF4097 domain-containing protein -
  BSK2_RS16770 (BSK2_16770) liaH 3251038..3251715 (-) 678 WP_003228506.1 stress responsive protein LiaH -
  BSK2_RS16775 (BSK2_16775) liaI 3251742..3252122 (-) 381 WP_029318422.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23110.77 Da        Isoelectric Point: 5.0313

>NTDB_id=185403 BSK2_RS16750 WP_021480575.1 3247613..3248248(-) (vraR) [Bacillus subtilis strain GQJK2]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=185403 BSK2_RS16750 WP_021480575.1 3247613..3248248(-) (vraR) [Bacillus subtilis strain GQJK2]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACATCGAAATCATCTCGTCAAATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.408

Multiple sequence alignment