Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   A9C19_RS07845 Genome accession   NZ_CP016020
Coordinates   1630869..1631471 (-) Length   200 a.a.
NCBI ID   WP_072581794.1    Uniprot ID   A0A1L3MXD4
Organism   Bacillus weihaiensis strain Alg07     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1625869..1636471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS07830 (A9C19_07675) nth 1626725..1627381 (+) 657 WP_072579427.1 endonuclease III -
  A9C19_RS07835 (A9C19_07680) - 1627381..1627908 (+) 528 WP_072579428.1 YpoC family protein -
  A9C19_RS07840 (A9C19_07685) - 1627948..1630572 (-) 2625 WP_072579429.1 PBP1A family penicillin-binding protein -
  A9C19_RS07845 (A9C19_07690) recU 1630869..1631471 (-) 603 WP_072581794.1 Holliday junction resolvase RecU Machinery gene
  A9C19_RS07850 (A9C19_07695) - 1631605..1632585 (+) 981 WP_083584317.1 DUF2515 family protein -
  A9C19_RS07855 (A9C19_07700) - 1632622..1632720 (-) 99 WP_072579430.1 spore protein -
  A9C19_RS07860 (A9C19_07705) - 1632894..1633136 (+) 243 WP_072579431.1 hypothetical protein -
  A9C19_RS07865 (A9C19_07710) - 1633218..1633580 (+) 363 WP_072579432.1 DUF1798 family protein -
  A9C19_RS07870 (A9C19_07715) - 1633760..1634971 (-) 1212 WP_072579433.1 MFS transporter -
  A9C19_RS07875 (A9C19_07720) - 1634978..1635400 (-) 423 WP_072579434.1 MarR family winged helix-turn-helix transcriptional regulator -
  A9C19_RS21975 - 1635702..1635866 (-) 165 WP_199445816.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23667.84 Da        Isoelectric Point: 9.7369

>NTDB_id=185311 A9C19_RS07845 WP_072581794.1 1630869..1631471(-) (recU) [Bacillus weihaiensis strain Alg07]
MFRYPNGKVYQPKEQEVKKKRQQQHPSFTYSNRGMSLEDDLNETNQYYLAHQIAVIHKKPTPVQIVNVDYPRRSAAVIRE
AYFKQSSTTDYNGIYKGKYIDFEAKETKNKTSFPLQNFHNHQIDHMKSVIRQGGICFVILSAFQQFYFLEAEPLFTFWDR
KENGGRKSISSDEINKYAHVIPQGYQARIDYLKIIDKLYF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=185311 A9C19_RS07845 WP_072581794.1 1630869..1631471(-) (recU) [Bacillus weihaiensis strain Alg07]
ATTTTTCGTTATCCTAACGGAAAGGTGTATCAACCAAAAGAACAAGAAGTAAAAAAAAAGCGACAGCAACAGCACCCTTC
TTTCACATATAGTAACCGAGGAATGTCTCTAGAGGATGATCTTAATGAGACTAATCAATATTATTTAGCTCATCAAATAG
CAGTGATACATAAGAAGCCTACACCCGTCCAAATAGTCAATGTCGATTATCCTAGAAGGAGTGCAGCTGTAATTCGGGAG
GCTTACTTTAAACAAAGCTCAACAACTGATTACAATGGAATTTATAAAGGAAAGTACATTGATTTTGAAGCTAAAGAAAC
GAAGAACAAAACATCTTTTCCGCTTCAAAATTTCCACAACCATCAAATTGACCATATGAAAAGTGTCATCCGTCAAGGTG
GGATATGTTTCGTTATCCTTTCTGCTTTTCAACAATTTTATTTTTTAGAAGCAGAGCCCCTCTTTACATTTTGGGATCGT
AAAGAAAACGGTGGCCGCAAATCTATATCAAGTGATGAAATCAACAAATATGCGCATGTTATACCTCAAGGATATCAAGC
AAGGATTGACTATCTTAAAATTATCGATAAACTATATTTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(33-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MXD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73

100

0.73

Multiple sequence alignment