Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSK2_RS05070 Genome accession   NZ_CP020367
Coordinates   984777..985424 (+) Length   215 a.a.
NCBI ID   WP_041851036.1    Uniprot ID   -
Organism   Bacillus subtilis strain GQJK2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 979777..990424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS05055 (BSK2_05055) glpD 979948..981615 (+) 1668 WP_041338128.1 glycerol-3-phosphate dehydrogenase -
  BSK2_RS05060 (BSK2_05060) pgcA 981747..983492 (+) 1746 WP_080529105.1 phosphoglucomutase -
  BSK2_RS05065 (BSK2_05065) yhcY 983641..984780 (+) 1140 WP_021479676.1 two-component system sensor histidine kinase YhcY -
  BSK2_RS05070 (BSK2_05070) vraR 984777..985424 (+) 648 WP_041851036.1 two-component system response regulator YhcZ Regulator
  BSK2_RS05075 (BSK2_05075) yhdA 985421..985945 (+) 525 WP_003244703.1 FMN-dependent NADPH-azoreductase -
  BSK2_RS05080 (BSK2_05080) yhdB 985960..986202 (-) 243 WP_003233373.1 YhdB family protein -
  BSK2_RS05085 (BSK2_05085) yhdC 986403..986726 (+) 324 WP_003233371.1 YqzG/YhdC family protein -
  BSK2_RS05090 (BSK2_05090) lytF 986768..988228 (-) 1461 WP_080529106.1 peptidoglycan endopeptidase LytF -
  BSK2_RS05095 (BSK2_05095) nsrR 988382..988822 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24190.87 Da        Isoelectric Point: 6.5033

>NTDB_id=185310 BSK2_RS05070 WP_041851036.1 984777..985424(+) (vraR) [Bacillus subtilis strain GQJK2]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSKAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=185310 BSK2_RS05070 WP_041851036.1 984777..985424(+) (vraR) [Bacillus subtilis strain GQJK2]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACTGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAACAATTTCCGGAGACGAATATCATTGTGCTA
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTAAAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4

Multiple sequence alignment