Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A9C19_RS06850 Genome accession   NZ_CP016020
Coordinates   1432223..1433923 (+) Length   566 a.a.
NCBI ID   WP_072579251.1    Uniprot ID   A0A1L3MQ48
Organism   Bacillus weihaiensis strain Alg07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427223..1438923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS06835 (A9C19_06685) dxs 1428317..1430215 (+) 1899 WP_072579248.1 1-deoxy-D-xylulose-5-phosphate synthase -
  A9C19_RS06840 (A9C19_06690) - 1430212..1431060 (+) 849 WP_072579249.1 TlyA family RNA methyltransferase -
  A9C19_RS06845 (A9C19_06695) ahrC 1431506..1431955 (+) 450 WP_072579250.1 transcriptional regulator AhrC/ArgR -
  A9C19_RS06850 (A9C19_06700) recN 1432223..1433923 (+) 1701 WP_072579251.1 DNA repair protein RecN Machinery gene
  A9C19_RS06855 (A9C19_06705) spoIVB 1434227..1435501 (+) 1275 WP_072581777.1 SpoIVB peptidase -
  A9C19_RS06865 (A9C19_06715) spo0A 1435801..1436592 (+) 792 WP_072579253.1 sporulation transcription factor Spo0A Regulator
  A9C19_RS06870 (A9C19_06720) - 1436703..1437224 (-) 522 WP_072579254.1 hypothetical protein -
  A9C19_RS06875 (A9C19_06725) - 1437358..1437513 (-) 156 WP_072579255.1 YycC family protein -
  A9C19_RS22550 - 1437563..1437907 (+) 345 WP_338022845.1 glycerophosphodiester phosphodiesterase family protein -
  A9C19_RS22555 - 1437853..1438308 (+) 456 WP_338022846.1 glycerophosphodiester phosphodiesterase family protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63956.35 Da        Isoelectric Point: 5.2022

>NTDB_id=185309 A9C19_RS06850 WP_072579251.1 1432223..1433923(+) (recN) [Bacillus weihaiensis strain Alg07]
MLAELSIKNFAIIEALTVSFEKGLTVLTGETGAGKSIIIDAIHLLAGARGSSEFVRYGEKRAELEGLFLIEDDNHPVYQK
CEDFGIDVSDGMIILRRDLSSSGKSICRINGKLVTIAILREVGQYLVDIHGQHDNQELMNEENHIHLLDQYGGKKTKHAL
EDYLEVFGRYETLQRKINKLTENEQEMAHRLDLLQFQLDEIESADLQPREDEILQEEKNQISNYERIFDSLQNGYNALHG
EHKGLDWVGHAMSNIENVGNLNHTLKELSEAISNVYYLLEDVSYQVRNELESLEFDPARLNFLESRLNEINHLKRKYGQS
VDEVLAYSAKIEEEIDTIQNKDSHLHNLQKELDSILKDLAVEAKNVTSIRKSFAEVLTKEIHKELKELYMEKTRFDVQFN
IKQKSVNETKYTASGIDEVEFFISTNPGEPLKSLSKTASGGELSRIMLAMKSIFSQHQGITSIIFDEVDTGVSGRVAQAI
AEKIYRVSNGSQVLCITHLPQVAAMADTHLYIAKETRSGRTKTSVKPLGENEKIREIGRMIAGVEVTELTKEHAKELLAL
AHTSKS

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=185309 A9C19_RS06850 WP_072579251.1 1432223..1433923(+) (recN) [Bacillus weihaiensis strain Alg07]
TTGCTAGCGGAATTATCAATTAAAAATTTTGCCATCATTGAAGCTTTAACCGTTTCATTTGAAAAGGGATTAACTGTATT
AACTGGAGAAACAGGTGCAGGGAAGTCAATAATCATTGATGCAATACATTTATTAGCAGGAGCAAGAGGTTCATCTGAAT
TTGTTCGGTATGGGGAAAAACGAGCAGAGTTAGAGGGTCTTTTTCTAATAGAGGATGATAACCATCCTGTCTATCAAAAA
TGTGAAGATTTTGGGATTGACGTAAGTGATGGAATGATTATTTTAAGACGAGACTTATCGTCTTCTGGTAAGAGTATTTG
TAGAATTAATGGAAAATTAGTCACAATAGCCATTTTACGTGAAGTTGGTCAATATTTAGTAGATATTCACGGACAACATG
ATAATCAAGAGTTGATGAACGAGGAAAACCATATCCATTTATTGGATCAATACGGTGGGAAGAAAACCAAACATGCCTTA
GAAGACTATCTTGAAGTGTTTGGTCGGTATGAGACTCTTCAGAGGAAAATTAATAAATTAACTGAGAATGAACAAGAAAT
GGCTCACCGCTTAGATTTATTGCAGTTTCAACTAGATGAAATAGAGAGTGCAGATCTACAGCCCCGAGAAGATGAAATTC
TACAGGAAGAAAAAAATCAAATTTCAAATTATGAAAGAATCTTTGATTCCTTACAAAATGGCTACAATGCTCTTCATGGT
GAACATAAAGGATTAGATTGGGTCGGACATGCTATGAGTAATATAGAGAATGTAGGAAATCTTAATCATACATTAAAGGA
ATTGTCTGAGGCGATATCTAACGTCTATTATTTACTTGAAGATGTGTCTTATCAAGTTAGAAATGAACTAGAATCATTAG
AGTTTGATCCGGCAAGATTGAATTTCTTGGAAAGTCGTTTGAACGAAATTAACCATCTTAAGAGAAAATATGGACAATCA
GTCGATGAAGTATTAGCCTATTCAGCAAAAATTGAAGAAGAAATTGATACTATTCAAAACAAAGACAGTCATTTGCATAA
TCTCCAAAAAGAATTAGACTCTATTCTTAAAGATTTAGCAGTTGAGGCCAAAAATGTAACAAGTATACGTAAAAGCTTTG
CAGAAGTTCTAACAAAAGAAATACACAAGGAACTAAAAGAGCTTTATATGGAAAAGACTAGATTTGATGTTCAATTTAAC
ATAAAACAAAAATCAGTAAATGAAACAAAGTACACGGCAAGTGGCATTGATGAAGTAGAGTTTTTTATTTCAACAAACCC
TGGTGAGCCCTTAAAATCATTGAGTAAAACAGCTTCTGGTGGAGAGCTGTCTAGAATTATGCTTGCAATGAAAAGTATCT
TCTCGCAACATCAAGGGATAACGTCCATTATATTTGATGAAGTGGATACTGGAGTAAGTGGACGAGTTGCCCAAGCTATA
GCGGAGAAAATTTATCGAGTTTCAAATGGATCACAAGTACTTTGTATTACTCATCTACCTCAAGTCGCTGCGATGGCAGA
CACGCATCTTTATATCGCAAAGGAAACCAGGTCAGGTAGAACAAAGACTTCTGTCAAACCTTTAGGTGAGAATGAAAAAA
TTAGAGAAATTGGACGGATGATTGCTGGTGTTGAAGTAACAGAGCTTACAAAAGAACATGCTAAAGAGCTTCTTGCATTA
GCTCACACATCTAAAAGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MQ48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

67.13

100

0.682

Multiple sequence alignment