Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   A9C19_RS06595 Genome accession   NZ_CP016020
Coordinates   1382347..1382472 (-) Length   41 a.a.
NCBI ID   WP_145925825.1    Uniprot ID   -
Organism   Bacillus weihaiensis strain Alg07     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Genomic Context

Location: 1377347..1387472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS06560 (A9C19_06415) - 1377355..1377705 (-) 351 WP_072579196.1 helix-turn-helix domain-containing protein -
  A9C19_RS06565 (A9C19_06420) - 1378001..1378300 (+) 300 WP_072579197.1 DUF5658 family protein -
  A9C19_RS06570 (A9C19_06425) sinR 1378585..1378917 (-) 333 WP_072579198.1 helix-turn-helix domain-containing protein Regulator
  A9C19_RS06575 (A9C19_06430) - 1379320..1379913 (+) 594 WP_072579199.1 CalY family protein -
  A9C19_RS06580 (A9C19_06435) tapA 1380044..1380871 (+) 828 WP_072579200.1 amyloid fiber anchoring/assembly protein TapA -
  A9C19_RS06585 (A9C19_06440) sipW 1380921..1381499 (+) 579 WP_072579201.1 signal peptidase I SipW -
  A9C19_RS06590 (A9C19_06445) - 1381533..1382138 (+) 606 WP_072579202.1 hypothetical protein -
  A9C19_RS06595 sinI 1382347..1382472 (-) 126 WP_145925825.1 anti-repressor SinI family protein Regulator
  A9C19_RS06600 (A9C19_06450) - 1383279..1384076 (-) 798 WP_072579203.1 YqhG family protein -
  A9C19_RS06605 (A9C19_06455) - 1384121..1385806 (-) 1686 WP_072579204.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 41 a.a.        Molecular weight: 4849.69 Da        Isoelectric Point: 4.2517

>NTDB_id=185307 A9C19_RS06595 WP_145925825.1 1382347..1382472(-) (sinI) [Bacillus weihaiensis strain Alg07]
MKERIMKDGQLDQEWVELILEALECGISVEEIKDFLLTKRV

Nucleotide


Download         Length: 126 bp        

>NTDB_id=185307 A9C19_RS06595 WP_145925825.1 1382347..1382472(-) (sinI) [Bacillus weihaiensis strain Alg07]
ATGAAGGAAAGAATTATGAAGGATGGACAATTGGACCAAGAGTGGGTTGAACTGATTTTAGAGGCTTTGGAATGTGGGAT
TAGTGTGGAGGAGATAAAGGATTTTTTACTTACTAAAAGAGTATGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

54.054

90.244

0.488

Multiple sequence alignment