Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   A9C19_RS06570 Genome accession   NZ_CP016020
Coordinates   1378585..1378917 (-) Length   110 a.a.
NCBI ID   WP_072579198.1    Uniprot ID   A0A1L3MPY4
Organism   Bacillus weihaiensis strain Alg07     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373585..1383917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS06520 (A9C19_06380) comGF 1373809..1374297 (+) 489 WP_072579191.1 competence type IV pilus minor pilin ComGF -
  A9C19_RS06525 (A9C19_06385) comGG 1374287..1374676 (+) 390 WP_072579192.1 competence type IV pilus minor pilin ComGG -
  A9C19_RS06530 (A9C19_06390) - 1374713..1375225 (+) 513 WP_072579193.1 shikimate kinase -
  A9C19_RS06535 (A9C19_06395) - 1375263..1375469 (+) 207 WP_072581772.1 YqzE family protein -
  A9C19_RS06540 (A9C19_06400) - 1375629..1375826 (+) 198 WP_083584306.1 helix-turn-helix transcriptional regulator -
  A9C19_RS06545 (A9C19_06405) - 1375841..1376314 (+) 474 WP_083584307.1 hypothetical protein -
  A9C19_RS06550 (A9C19_06410) - 1376617..1376931 (-) 315 WP_072579195.1 DUF3889 domain-containing protein -
  A9C19_RS21320 sinI 1377205..1377342 (-) 138 WP_099092744.1 DNA-binding anti-repressor SinI -
  A9C19_RS06560 (A9C19_06415) - 1377355..1377705 (-) 351 WP_072579196.1 helix-turn-helix domain-containing protein -
  A9C19_RS06565 (A9C19_06420) - 1378001..1378300 (+) 300 WP_072579197.1 DUF5658 family protein -
  A9C19_RS06570 (A9C19_06425) sinR 1378585..1378917 (-) 333 WP_072579198.1 helix-turn-helix domain-containing protein Regulator
  A9C19_RS06575 (A9C19_06430) - 1379320..1379913 (+) 594 WP_072579199.1 CalY family protein -
  A9C19_RS06580 (A9C19_06435) tapA 1380044..1380871 (+) 828 WP_072579200.1 amyloid fiber anchoring/assembly protein TapA -
  A9C19_RS06585 (A9C19_06440) sipW 1380921..1381499 (+) 579 WP_072579201.1 signal peptidase I SipW -
  A9C19_RS06590 (A9C19_06445) - 1381533..1382138 (+) 606 WP_072579202.1 hypothetical protein -
  A9C19_RS06595 sinI 1382347..1382472 (-) 126 WP_145925825.1 anti-repressor SinI family protein Regulator

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12666.32 Da        Isoelectric Point: 7.2041

>NTDB_id=185306 A9C19_RS06570 WP_072579198.1 1378585..1378917(-) (sinR) [Bacillus weihaiensis strain Alg07]
MIGPRIKKYRTQKNLSLSELAERAGVAKSYLSSIERNLQSNPSVQFLEKISSVLGVSVNTLLNEEKESDPKELDHDWIQL
VQDAMSSGVSKDQFREFLEFNKWKINNEHK

Nucleotide


Download         Length: 333 bp        

>NTDB_id=185306 A9C19_RS06570 WP_072579198.1 1378585..1378917(-) (sinR) [Bacillus weihaiensis strain Alg07]
GTGATTGGCCCACGTATTAAAAAATATCGAACGCAGAAAAATTTATCTCTTTCCGAACTAGCTGAACGAGCAGGAGTTGC
AAAATCATATTTAAGTTCTATTGAGCGTAACCTTCAATCAAACCCTTCTGTTCAATTCCTAGAAAAGATTTCTTCGGTGC
TAGGTGTTTCTGTAAATACATTGCTTAATGAAGAAAAAGAAAGTGATCCCAAGGAACTTGATCATGACTGGATTCAATTG
GTTCAGGATGCTATGAGTTCTGGTGTTTCGAAGGATCAATTTCGTGAATTTCTTGAATTTAATAAATGGAAAATTAATAA
CGAACATAAATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(73-100)

Helix-turn-helix (HTH_3)

(6-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MPY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

68.571

95.455

0.655

Multiple sequence alignment