Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A9Y61_RS11285 Genome accession   NZ_CP016017
Coordinates   2085012..2085476 (-) Length   154 a.a.
NCBI ID   WP_154811799.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 34769     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2080012..2090476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Y61_RS11265 (A9Y61_11265) - 2080376..2081251 (-) 876 WP_003686971.1 NUDIX hydrolase -
  A9Y61_RS11275 (A9Y61_11275) thiC 2081849..2083750 (+) 1902 WP_003697841.1 phosphomethylpyrimidine synthase ThiC -
  A9Y61_RS11280 (A9Y61_11280) - 2084239..2084631 (-) 393 Protein_2101 pilin -
  A9Y61_RS11285 (A9Y61_11285) pilE 2085012..2085476 (-) 465 WP_154811799.1 pilin Machinery gene
  A9Y61_RS15040 (A9Y61_11290) - 2085832..2086243 (-) 412 Protein_2103 pilin -
  A9Y61_RS15045 - 2086283..2086624 (-) 342 Protein_2104 pilin -
  A9Y61_RS11295 (A9Y61_11295) - 2086622..2086936 (+) 315 Protein_2105 NAD(P)-dependent oxidoreductase -
  A9Y61_RS11300 (A9Y61_11300) metG 2087011..2089065 (-) 2055 WP_047920952.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16738.45 Da        Isoelectric Point: 5.2513

>NTDB_id=185250 A9Y61_RS11285 WP_154811799.1 2085012..2085476(-) (pilE) [Neisseria gonorrhoeae strain 34769]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGKWPENNTSAGVTSPATDIKGKYVQSVTVANGVVTAEMNSSGVNKEI
QGKRLSLWGRRENGSVKWFCGQPVTRDNVAADNDDVTDDKNNNGIDTKHLPSTCRDKSTAVCIETPPTAFYKNT

Nucleotide


Download         Length: 465 bp        

>NTDB_id=185250 A9Y61_RS11285 WP_154811799.1 2085012..2085476(-) (pilE) [Neisseria gonorrhoeae strain 34769]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCAAATGGCCGGAAAACAACACTTCTGCCGGCGTGACATCCCCCGCCACCGACATCAAAG
GCAAATATGTTCAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCGAAATGAATTCAAGCGGCGTAAACAAAGAAATC
CAAGGCAAAAGACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAACGTTGCCGCCGACAACGACGACGTTACCGACGACAAAAACAACAACGGCATCGACACCAAGCACCTGCCGTCAACCT
GCCGCGATAAATCAACTGCCGTTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

73.571

90.909

0.669
  pilE Neisseria gonorrhoeae strain FA1090

68.794

91.558

0.63

Multiple sequence alignment