Detailed information NTG0185240

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A9Y61_RS09150
• Genome accession: NZ_CP016017
• Coordinates: 1694812..1695672 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain 34769
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1689812..1700672

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9Y61_RS09135 (A9Y61_09135)	dapD	1690322..1691143 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
A9Y61_RS09140 (A9Y61_09140)	pgi	1691353..1692996 (-)	1644	WP_003689806.1	glucose-6-phosphate isomerase	-
A9Y61_RS09145 (A9Y61_09145)	pilG	1693506..1694738 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
A9Y61_RS09150 (A9Y61_09150)	pilD	1694812..1695672 (+)	861	WP_003689814.1	prepilin peptidase	Machinery gene
A9Y61_RS09155 (A9Y61_09155)	coaE	1695669..1696301 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
A9Y61_RS09160 (A9Y61_09160)	-	1696294..1696503 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
A9Y61_RS09165 (A9Y61_09165)	pilF	1696589..1698265 (-)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
A9Y61_RS09175 (A9Y61_09175)	-	1698603..1699049 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
A9Y61_RS09180 (A9Y61_09180)	-	1699053..1700027 (-)	975	WP_003705489.1	polyprenyl synthetase family protein	-
A9Y61_RS09185 (A9Y61_09185)	rplU	1700251..1700559 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=185240 A9Y61_RS09150 WP_003689814.1 1694812..1695672(+) (pilD) [Neisseria gonorrhoeae strain 34769]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=185240 A9Y61_RS09150 WP_003689814.1 1694812..1695672(+) (pilD) [Neisseria gonorrhoeae strain 34769]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441