Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   A9Y61_RS02400 Genome accession   NZ_CP016017
Coordinates   449038..449646 (+) Length   202 a.a.
NCBI ID   WP_047920984.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 34769     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444038..454646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Y61_RS02375 (A9Y61_02375) - 444485..444817 (+) 333 WP_003687908.1 hypothetical protein -
  A9Y61_RS02380 (A9Y61_02380) - 445144..445653 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A9Y61_RS02385 (A9Y61_02385) - 445883..446464 (-) 582 WP_033910016.1 superoxide dismutase -
  A9Y61_RS02390 (A9Y61_02390) dnaB 446627..448033 (+) 1407 WP_047920786.1 replicative DNA helicase -
  A9Y61_RS02395 (A9Y61_02395) pilH 448341..449006 (+) 666 WP_047920982.1 GspH/FimT family pseudopilin Machinery gene
  A9Y61_RS02400 (A9Y61_02400) pilI 449038..449646 (+) 609 WP_047920984.1 type IV pilus modification protein PilV Machinery gene
  A9Y61_RS02405 (A9Y61_02405) pilJ 449643..450611 (+) 969 WP_047920986.1 PilW family protein Machinery gene
  A9Y61_RS02410 (A9Y61_02410) pilK 450590..451198 (+) 609 WP_047920987.1 pilus assembly PilX family protein Machinery gene
  A9Y61_RS02415 (A9Y61_02415) pilL 451200..451673 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  A9Y61_RS02420 (A9Y61_02420) - 451743..452051 (-) 309 WP_047920338.1 AzlD family protein -
  A9Y61_RS13755 - 452048..452758 (-) 711 Protein_457 AzlC family ABC transporter permease -
  A9Y61_RS02430 (A9Y61_02430) dut 452924..453376 (+) 453 WP_010359930.1 dUTP diphosphatase -
  A9Y61_RS02435 (A9Y61_02435) dapC 453454..454641 (+) 1188 WP_010359932.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22039.93 Da        Isoelectric Point: 5.2847

>NTDB_id=185219 A9Y61_RS02400 WP_047920984.1 449038..449646(+) (pilI) [Neisseria gonorrhoeae strain 34769]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGSYPPTSSNGDFKLNNLISKRDLAKTQLDRFGYELKNALPDAAGIHYAVCKDSSGKEPTLSGNTFSPNCDNKANG
DTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=185219 A9Y61_RS02400 WP_047920984.1 449038..449646(+) (pilI) [Neisseria gonorrhoeae strain 34769]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTTGCTATGCTGGT
TCTGACCATCGGTATTTTGGCATTGTTGTCCGTGCAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGTCGTACCCCCCCACTTCCTCTAACGGCGATTTCAAGCTTAATAATTTGATAAGTAAGAGGGA
TTTGGCAAAGACCCAGTTGGACAGGTTCGGTTATGAATTGAAAAATGCCTTGCCGGATGCGGCAGGTATCCATTACGCCG
TCTGCAAGGATTCGTCGGGTAAAGAGCCGACATTGTCCGGCAATACTTTTTCTCCAAATTGCGATAATAAGGCAAACGGG
GATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAAGTGAGCGG
CGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

92.574

100

0.926
  pilV Neisseria gonorrhoeae MS11

92.574

100

0.926
  pilV Neisseria meningitidis 8013

86.408

100

0.881

Multiple sequence alignment