Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A9Y61_RS01470 Genome accession   NZ_CP016017
Coordinates   280922..281725 (-) Length   267 a.a.
NCBI ID   WP_064668797.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 34769     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 275922..286725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Y61_RS13725 - 278326..278601 (-) 276 WP_153707850.1 hypothetical protein -
  A9Y61_RS01465 (A9Y61_01465) comA 278633..280852 (+) 2220 WP_154235627.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A9Y61_RS01470 (A9Y61_01470) comL 280922..281725 (-) 804 WP_064668797.1 outer membrane protein assembly factor BamD Machinery gene
  A9Y61_RS01475 (A9Y61_01475) rluD 281724..282848 (+) 1125 WP_047920802.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A9Y61_RS01480 (A9Y61_01480) - 283001..283948 (-) 948 Protein_275 bile acid:sodium symporter family protein -
  A9Y61_RS01485 (A9Y61_01485) - 284025..284249 (-) 225 WP_225577482.1 hypothetical protein -
  A9Y61_RS01490 (A9Y61_01490) pgeF 284401..285180 (+) 780 WP_003687651.1 peptidoglycan editing factor PgeF -
  A9Y61_RS01495 (A9Y61_01495) lptE 285232..285711 (+) 480 WP_003687653.1 LPS assembly lipoprotein LptE -
  A9Y61_RS01500 (A9Y61_01500) holA 285713..286711 (+) 999 WP_003690761.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30837.92 Da        Isoelectric Point: 9.3372

>NTDB_id=185214 A9Y61_RS01470 WP_064668797.1 280922..281725(-) (comL) [Neisseria gonorrhoeae strain 34769]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRNPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=185214 A9Y61_RS01470 WP_064668797.1 280922..281725(-) (comL) [Neisseria gonorrhoeae strain 34769]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGACCAGTCCTTCCTGAACAAACTGGCATCGCAAG
ACTGGTCCGACCGCAACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

99.625

100

0.996
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment