Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ASO12_RS08205 Genome accession   NZ_CP016015
Coordinates   1530010..1530420 (+) Length   136 a.a.
NCBI ID   WP_064662134.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 32867     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1525010..1535420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASO12_RS08180 (ASO12_08180) recO 1525692..1526435 (-) 744 WP_003689392.1 DNA repair protein RecO -
  ASO12_RS08185 (ASO12_08185) pheA 1526469..1527596 (-) 1128 WP_082279058.1 prephenate dehydratase -
  ASO12_RS08190 (ASO12_08190) - 1527635..1528864 (-) 1230 Protein_1534 multidrug effflux MFS transporter -
  ASO12_RS08200 (ASO12_08200) - 1528980..1529855 (-) 876 WP_003693582.1 DMT family transporter -
  ASO12_RS08205 (ASO12_08205) pilE 1530010..1530420 (+) 411 WP_064662134.1 pilin Machinery gene
  ASO12_RS08210 (ASO12_08210) - 1530965..1531768 (+) 804 WP_082279180.1 opacity family porin -
  ASO12_RS08215 (ASO12_08215) - 1532049..1532861 (-) 813 WP_003689398.1 carbon-nitrogen hydrolase family protein -
  ASO12_RS08220 (ASO12_08220) - 1532946..1533818 (+) 873 WP_003689400.1 prephenate dehydrogenase -
  ASO12_RS08225 (ASO12_08225) - 1533876..1535030 (-) 1155 WP_010358927.1 NnrS family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14528.17 Da        Isoelectric Point: 7.1341

>NTDB_id=185142 ASO12_RS08205 WP_064662134.1 1530010..1530420(+) (pilE) [Neisseria gonorrhoeae strain 32867]
MPLFQGPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPENNGDAGVASSSSIKGKYVKSVTVAKGVVTAQMASTGVNKE
IQGKKLSLWAKREDGSVKWFCGQPVTRNGDTVADANDGIDTKHLPSTCRDKASDAT

Nucleotide


Download         Length: 411 bp        

>NTDB_id=185142 ASO12_RS08205 WP_064662134.1 1530010..1530420(+) (pilE) [Neisseria gonorrhoeae strain 32867]
TTGCCGTTGTTCCAAGGTCCGGACTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGC
CGTTACCGAGTATTACCTGAATCACGGCGAATGGCCGGAAAACAACGGTGATGCCGGCGTGGCATCTTCTTCATCAATCA
AAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCCAAATGGCTTCAACCGGCGTAAACAAAGAA
ATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCG
CAACGGCGACACCGTTGCCGACGCCAACGACGGCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTG
ATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(16-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.471

100

0.765
  pilE Neisseria gonorrhoeae MS11

73.381

100

0.75

Multiple sequence alignment