Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   THL1_RS10775 Genome accession   NZ_CP015992
Coordinates   2341757..2342392 (+) Length   211 a.a.
NCBI ID   WP_069083260.1    Uniprot ID   -
Organism   Pseudomonas sp. TCU-HL1 isolate Hualien Taiwan     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2336757..2347392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THL1_RS10755 (THL1_2154) lolD 2336778..2337461 (+) 684 WP_069083257.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  THL1_RS10760 (THL1_2155) - 2337463..2338707 (+) 1245 WP_069083258.1 lipoprotein-releasing ABC transporter permease subunit -
  THL1_RS10765 (THL1_2156) - 2338758..2339285 (-) 528 WP_069083259.1 DUF2062 domain-containing protein -
  THL1_RS10770 (THL1_2157) comA 2339460..2341685 (+) 2226 WP_069086478.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  THL1_RS10775 (THL1_2158) exbB 2341757..2342392 (+) 636 WP_069083260.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  THL1_RS10780 (THL1_2159) - 2342389..2342835 (+) 447 WP_069083261.1 ExbD/TolR family protein -
  THL1_RS10785 (THL1_2160) lpxK 2342835..2343839 (+) 1005 WP_069083262.1 tetraacyldisaccharide 4'-kinase -
  THL1_RS10790 (THL1_2161) - 2343878..2344063 (+) 186 WP_069083263.1 Trm112 family protein -
  THL1_RS10795 (THL1_2162) kdsB 2344060..2344824 (+) 765 WP_069083264.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  THL1_RS10800 (THL1_2163) - 2344824..2345288 (+) 465 WP_069083265.1 low molecular weight protein-tyrosine-phosphatase -
  THL1_RS10805 (THL1_2164) murB 2345285..2346304 (+) 1020 WP_069083266.1 UDP-N-acetylmuramate dehydrogenase -
  THL1_RS10810 (THL1_2165) - 2346364..2346645 (-) 282 WP_069083267.1 pyrimidine/purine nucleoside phosphorylase -
  THL1_RS10815 (THL1_2166) - 2346723..2347265 (-) 543 WP_069083268.1 exonuclease domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22979.17 Da        Isoelectric Point: 6.8677

>NTDB_id=184976 THL1_RS10775 WP_069083260.1 2341757..2342392(+) (exbB) [Pseudomonas sp. TCU-HL1 isolate Hualien Taiwan]
MWELVKAGGWMMLPIILCSIAATAIVAERLWTLRLSRVSPPHLLGQVWRQIKDKQLNGQRLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIDIFGGFMENGMANAPLLAGGIAKALVTTAA
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEVVQGDREVDFAEEAKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=184976 THL1_RS10775 WP_069083260.1 2341757..2342392(+) (exbB) [Pseudomonas sp. TCU-HL1 isolate Hualien Taiwan]
GTGTGGGAGTTGGTCAAAGCCGGTGGCTGGATGATGCTACCGATCATTCTGTGTTCCATCGCCGCCACCGCGATAGTTGC
TGAACGCCTGTGGACCTTGCGCCTCAGTCGCGTCTCGCCGCCGCACCTGCTGGGACAGGTCTGGCGCCAGATCAAGGACA
AGCAACTCAATGGCCAGAGGCTCAAGGAACTGCGCGCATCGTCGCCCCTGGGTGAAGTGTTGGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCAGCCGGGTCATTCATGAACTGGAGCGCTACCT
CAACGCCCTTGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTCGGCACCGTGTTCGGCATGATCGATATCTTCG
GTGGCTTCATGGAAAACGGCATGGCCAATGCGCCGCTGCTGGCCGGCGGGATCGCCAAGGCCCTGGTGACCACTGCGGCG
GGCCTGATCGTGGCCATCCCCGCTGTGTTCTTCCATCGCTATCTGCTGCGTCGCGTCGACGAGTTGGTGGTAGCCATGGA
GCAGGAGGCGATCAAGCTGGTTGAAGTGGTCCAGGGTGATCGCGAGGTCGACTTCGCAGAGGAAGCCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.609

98.104

0.81

Multiple sequence alignment