Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EC780_RS11520 Genome accession   NZ_CP020106
Coordinates   2181474..2182901 (-) Length   475 a.a.
NCBI ID   WP_000980618.1    Uniprot ID   -
Organism   Escherichia coli strain 13E0780     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176474..2187901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC780_RS11495 (EC780_11495) yeeZ 2176529..2177353 (+) 825 WP_000754752.1 SDR family oxidoreductase -
  EC780_RS11500 (EC780_11500) yeeY 2177399..2178328 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  EC780_RS29090 yoeI 2178543..2178605 (+) 63 WP_010723108.1 membrane protein YoeI -
  EC780_RS11505 (EC780_11505) plaP 2178595..2179953 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EC780_RS11510 (EC780_11510) tsuA 2180132..2181190 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  EC780_RS11515 (EC780_11515) tsuB 2181204..2181431 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EC780_RS11520 (EC780_11520) sbcB 2181474..2182901 (-) 1428 WP_000980618.1 exodeoxyribonuclease I Machinery gene
  EC780_RS11525 (EC780_11525) dacD 2183110..2184276 (+) 1167 WP_001379902.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EC780_RS11530 (EC780_11530) sbmC 2184395..2184868 (+) 474 WP_001105380.1 DNA gyrase inhibitor SbmC -
  EC780_RS11535 (EC780_11535) yeeA 2185066..2186124 (+) 1059 WP_032314597.1 FUSC family protein -
  EC780_RS11540 (EC780_11540) tmaR 2186296..2186625 (+) 330 WP_000450409.1 DUF496 family protein -
  EC780_RS11545 (EC780_11545) - 2186726..2186917 (-) 192 Protein_2129 EutP/PduV family microcompartment system protein -
  EC780_RS11550 (EC780_11550) cobU 2187084..2187629 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54444.66 Da        Isoelectric Point: 5.3435

>NTDB_id=184976 EC780_RS11520 WP_000980618.1 2181474..2182901(-) (sbcB) [Escherichia coli strain 13E0780]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=184976 EC780_RS11520 WP_000980618.1 2181474..2182901(-) (sbcB) [Escherichia coli strain 13E0780]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACTTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATCGATGTTCCGCAGATGAACCCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment