Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EC725_RS07290 Genome accession   NZ_CP020092
Coordinates   1387790..1388527 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 13E0725     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382790..1393527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC725_RS07260 (EC725_07260) yfiL 1382948..1383313 (-) 366 WP_032314308.1 DUF2799 domain-containing protein -
  EC725_RS07265 (EC725_07265) aroF 1383523..1384593 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EC725_RS07270 (EC725_07270) tyrA 1384604..1385725 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EC725_RS07275 (EC725_07275) pheA 1385768..1386928 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  EC725_RS27105 pheL 1387027..1387074 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EC725_RS07280 (EC725_07280) raiA 1387178..1387519 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EC725_RS07290 (EC725_07290) comL 1387790..1388527 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EC725_RS07295 (EC725_07295) rluD 1388662..1389642 (+) 981 WP_032314306.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EC725_RS07300 (EC725_07300) yfiH 1389639..1390370 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  EC725_RS07305 (EC725_07305) clpC 1390500..1393073 (+) 2574 WP_080025921.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=184732 EC725_RS07290 WP_000197686.1 1387790..1388527(-) (comL) [Escherichia coli strain 13E0725]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=184732 EC725_RS07290 WP_000197686.1 1387790..1388527(-) (comL) [Escherichia coli strain 13E0725]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment