Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   A9E94_RS13380 Genome accession   NZ_CP015954
Coordinates   3020960..3021619 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila strain E7_O     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3015960..3026619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9E94_RS13365 (A9E94_13365) - 3016760..3017419 (+) 660 WP_010948343.1 hypothetical protein -
  A9E94_RS13370 (A9E94_13370) - 3017587..3019068 (+) 1482 WP_010948344.1 DUF1566 domain-containing protein -
  A9E94_RS13375 (A9E94_13375) uvrC 3019092..3020948 (-) 1857 WP_010948345.1 excinuclease ABC subunit UvrC -
  A9E94_RS13380 (A9E94_13380) letA 3020960..3021619 (-) 660 WP_011216518.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  A9E94_RS13385 (A9E94_13385) phhA 3021744..3022562 (-) 819 WP_010948347.1 phenylalanine 4-monooxygenase -
  A9E94_RS13390 (A9E94_13390) - 3023001..3024098 (+) 1098 WP_010948348.1 competence/damage-inducible protein A -
  A9E94_RS13395 (A9E94_13395) cgtA 3024057..3025082 (-) 1026 WP_010948349.1 Obg family GTPase CgtA -
  A9E94_RS13400 (A9E94_13400) rpmA 3025297..3025575 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  A9E94_RS13405 (A9E94_13405) rplU 3025588..3025899 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=184656 A9E94_RS13380 WP_011216518.1 3020960..3021619(-) (letA) [Legionella pneumophila strain E7_O]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=184656 A9E94_RS13380 WP_011216518.1 3020960..3021619(-) (letA) [Legionella pneumophila strain E7_O]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTAGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCCTATGTAAAAACCCACTCCCCTGATGTCGTATTATTAG
ATATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCT
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAGTCAGG
GGCTGAAGAAATGGCTGCCGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGTCTCAGGATTCCCCTTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment