Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   Vc3S01_RS16295 Genome accession   NZ_CP020076
Coordinates   3389947..3390621 (-) Length   224 a.a.
NCBI ID   WP_038890943.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3384947..3395621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS16260 (Vc3S01_3003) coaD 3385826..3386311 (+) 486 WP_045456121.1 pantetheine-phosphate adenylyltransferase -
  Vc3S01_RS16265 (Vc3S01_3004) - 3386308..3387255 (+) 948 WP_077201174.1 glycosyl transferase family 90 -
  Vc3S01_RS16270 (Vc3S01_3005) - 3387248..3387619 (+) 372 WP_086371189.1 diacylglycerol kinase -
  Vc3S01_RS16275 (Vc3S01_3006) mutM 3387656..3388465 (-) 810 WP_077201175.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  Vc3S01_RS16280 (Vc3S01_3007) - 3388569..3389045 (-) 477 WP_045420047.1 hypothetical protein -
  Vc3S01_RS16285 (Vc3S01_3008) rpmG 3389223..3389393 (-) 171 WP_004410866.1 50S ribosomal protein L33 -
  Vc3S01_RS16290 (Vc3S01_3009) rpmB 3389407..3389643 (-) 237 WP_005384783.1 50S ribosomal protein L28 -
  Vc3S01_RS16295 (Vc3S01_3010) radC 3389947..3390621 (-) 675 WP_038890943.1 DNA repair protein RadC Machinery gene
  Vc3S01_RS16300 (Vc3S01_3011) - 3390735..3392408 (-) 1674 WP_077201176.1 methyl-accepting chemotaxis protein -
  Vc3S01_RS16310 (Vc3S01_3012) coaBC 3392616..3393815 (+) 1200 WP_077201177.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  Vc3S01_RS16315 (Vc3S01_3013) slmA 3393976..3394566 (+) 591 WP_005434407.1 nucleoid occlusion factor SlmA -
  Vc3S01_RS16320 (Vc3S01_3014) - 3394572..3395522 (+) 951 WP_077201178.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25324.07 Da        Isoelectric Point: 6.8490

>NTDB_id=184532 Vc3S01_RS16295 WP_038890943.1 3389947..3390621(-) (radC) [Vibrio campbellii strain 20130629003S01]
MTLKTLPNESMPREKLLNRGPQALSDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEKEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=184532 Vc3S01_RS16295 WP_038890943.1 3389947..3390621(-) (radC) [Vibrio campbellii strain 20130629003S01]
ATGACACTGAAAACCTTGCCCAACGAGTCCATGCCAAGAGAGAAATTGCTTAACCGCGGACCACAAGCGTTGTCGGATGC
CGAATTACTGGCTATTTTTCTGCGCACTGGAACGCAAGGTATGAACGTCATCGAATTAGCCGACTTTCTGATCCAAGACT
TTGGATCGCTTCGCCAGTTGTTTTCTGCTTCAGAGAAAGAGTTTTGCCAACATAAAGGGTTAGGGCAAGCGAAATACGTG
CAGTTACAAGCCGTTTTGGAAATGACGCAACGCTATTTAGCCGAGACATTAAAGCGTGGTGATGCGTTAACCAGCCCAGA
ACAAACCAAACTTTATCTTTCTTCTATATTAAGAGACCGACAAAGAGAGGCTTTTTACATTCTTTTCTTAGATAACCAAC
ATCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACACTCGATGCTGCATCGGTTTATCCGAGAGAAGTCGTCAAACGC
GCCTTGCACCACAACGCCGCTGCATTGATTTTGGCTCACAATCACCCGTCAGGTGTGGCGGAACCTAGCCAAGCAGATAG
AAGGATTACCCGGCGTTTAATCGACGCTTTAGCGCTGGTGGATATTCGAATTTTGGACCATTTCGTTATCGGAGATGGGG
AAAGCGTCTCTTTTGCCGAAAGAGGTTGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

52.535

96.875

0.509
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.384