Detailed information NTG0184527

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: Vc3S01_RS14620
• Genome accession: NZ_CP020076
• Coordinates: 3030886..3033459 (-)
• Length: 857 a.a.
• NCBI ID: WP_077201091.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain 20130629003S01
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3025886..3038459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Vc3S01_RS14620 (Vc3S01_2681)	clpC	3030886..3033459 (-)	2574	WP_077201091.1	ATP-dependent chaperone ClpB	Regulator
Vc3S01_RS14625 (Vc3S01_2682)	pgeF	3033606..3034334 (-)	729	WP_077201092.1	peptidoglycan editing factor PgeF	-
Vc3S01_RS14630 (Vc3S01_2683)	rluD	3034336..3035313 (-)	978	WP_005425317.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
Vc3S01_RS14635 (Vc3S01_2684)	comL	3035450..3036178 (+)	729	WP_005425318.1	outer membrane protein assembly factor BamD	Machinery gene
Vc3S01_RS14640 (Vc3S01_2685)	-	3036321..3037790 (+)	1470	WP_045456505.1	lytic transglycosylase F	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95954.66 Da
• Isoelectric Point: 5.1146

>NTDB_id=184527 Vc3S01_RS14620 WP_077201091.1 3030886..3033459(-) (clpC) [Vibrio campbellii strain 20130629003S01]
MRLDRFTSKFQIAISDAQSLALGRDHQYIEPVHLMVALLDQNGSPIRPLLTMLDVDVTHLRSKLSEMLDRLPKVSGIGGD
VQLSSSMGTVFNLCDKVAQKRQDSYISSEVFLLAALEDRGPLGQLLKEMGLTEQKVSQAIEKIRGGQKVNDPNAEELRQA
LEKFTIDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGEPGVGKTAIVEGLAQRIINNEVPEGLRGRRVLAL
DMGALVAGAKYRGEFEERLKSVLNELAKEEGNVILFIDELHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHRYVSDRQLPDKAIDLIDEAASS
IRLQIDSKPESLDKLERKIIQLKIEQQALSNEHDEASEKRLDVLNEELNEKEREYAELEEVWNAEKAALSGTQHIKGELE
QARMDMDFARRAGDLNRMSELQYGRIPELEKQLDLATQAEMQEMTLLRNKVTDNEIAEVLSKQTGIPVSKMLEAEKEKLL
RMEEVLHKRVIGQAEAVEVVSNAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELCKTLASFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSARIQENFATLDYQGIKNEVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSEKAL
DLIAQVGFDPVYGARPLKRAIQQNVENPLAKSILAGQILPDKKVQLIVNNDQIIAHQ

Nucleotide

• Length: 2574 bp

>NTDB_id=184527 Vc3S01_RS14620 WP_077201091.1 3030886..3033459(-) (clpC) [Vibrio campbellii strain 20130629003S01]
ATGCGTCTTGATAGATTCACAAGTAAGTTTCAAATCGCTATCTCTGATGCTCAGTCACTAGCGTTAGGGCGCGATCATCA
ATATATCGAACCTGTGCACCTAATGGTAGCATTGCTTGATCAGAACGGTAGCCCAATTCGTCCACTGCTAACCATGTTAG
ATGTTGACGTGACTCATCTACGCTCTAAATTGAGCGAAATGTTAGACCGGCTGCCTAAAGTAAGTGGCATCGGCGGTGAT
GTTCAGCTGTCTAGCTCTATGGGGACAGTTTTCAATTTGTGCGACAAAGTGGCTCAAAAGCGTCAGGACTCCTACATCTC
TTCCGAAGTCTTTTTGCTTGCAGCATTAGAAGACCGTGGCCCACTTGGTCAGCTATTAAAAGAGATGGGCTTGACCGAGC
AGAAAGTCAGCCAAGCGATCGAAAAGATCAGAGGTGGTCAAAAGGTCAATGACCCGAACGCGGAAGAACTACGCCAAGCA
TTGGAAAAGTTCACCATAGACCTAACAGAACGCGCAGAACAGGGTAAGTTAGATCCTGTTATCGGCCGTGATGATGAAAT
CCGCCGTACCATCCAAGTATTGCAGCGTCGTACCAAGAACAACCCAGTGATCATTGGTGAACCTGGTGTGGGTAAAACCG
CTATCGTAGAGGGCTTGGCTCAGCGCATCATTAATAATGAAGTACCAGAGGGGCTACGTGGTCGCCGCGTACTTGCATTA
GATATGGGCGCACTTGTTGCAGGTGCAAAATACCGTGGTGAATTTGAAGAGCGTTTGAAATCGGTATTGAATGAACTAGC
CAAAGAAGAAGGTAACGTCATTCTATTCATTGATGAGCTTCATACTATGGTTGGCGCAGGTAAGGGCGAGGGCTCTATGG
ATGCCGGTAATATGCTAAAACCAGCATTGGCCCGTGGTGAACTCCACTGTGTGGGCGCGACTACATTGGATGAATACCGC
CAATATATAGAGAAAGATGCCGCACTTGAGCGTCGTTTCCAAAAAGTGCTGGTGGATGAGCCAACAGTAGAAGACACGAT
TGCCATTCTGCGTGGTTTGAAAGAGCGCTATGAGCTTCACCATCACGTAGAAATTACCGACCCAGCGATCGTAGCAGCTG
CGAGCTTGTCGCATCGTTATGTTTCGGATCGTCAATTGCCTGATAAAGCAATCGACCTTATTGATGAAGCAGCCTCTAGC
ATTCGTCTACAGATCGACTCCAAGCCAGAGTCTTTAGACAAGCTCGAACGTAAAATCATCCAACTTAAGATCGAGCAGCA
AGCGCTGAGCAACGAGCATGATGAAGCAAGTGAAAAGCGCTTGGATGTGCTTAATGAAGAATTGAATGAAAAAGAGCGCG
AGTATGCAGAGCTAGAAGAAGTGTGGAATGCTGAAAAAGCCGCACTCTCTGGTACGCAACATATTAAAGGTGAACTAGAG
CAAGCTCGTATGGATATGGACTTTGCACGCCGTGCTGGTGACCTAAACCGCATGTCCGAATTGCAATACGGCCGTATTCC
TGAACTTGAAAAGCAACTTGATCTTGCTACTCAAGCTGAAATGCAAGAAATGACTCTATTGCGGAATAAGGTGACGGACA
ACGAGATTGCAGAAGTGCTCTCTAAGCAAACGGGTATTCCGGTCTCTAAAATGCTCGAAGCAGAAAAAGAAAAACTGCTC
CGCATGGAAGAGGTACTGCACAAACGTGTGATTGGTCAGGCAGAAGCGGTTGAAGTGGTGTCTAACGCAATTCGTCGTAG
TCGAGCTGGCTTATCCGATCCAAACAAACCGATTGGTTCCTTCTTATTCTTAGGTCCAACAGGTGTGGGTAAAACAGAAC
TATGTAAGACACTCGCGAGCTTCATGTTTGATAGTGAAGATGCCATGGTACGTATCGATATGTCCGAGTTCATGGAGAAA
CACTCTGTGGCGAGATTGGTTGGTGCGCCTCCGGGTTATGTTGGCTATGAAGAAGGTGGCTATTTAACAGAAGCAGTTCG
CCGTAAACCTTATTCTGTCATCCTATTAGACGAAGTAGAGAAGGCACACCCAGATGTGTTCAATATTCTGCTGCAAGTAT
TGGATGATGGTCGGCTAACTGATGGTCAGGGTAGAACGGTGGATTTCCGTAACACTGTAGTGATCATGACTTCGAACTTG
GGTTCTGCTCGTATCCAGGAGAACTTTGCGACGTTGGATTACCAAGGTATTAAGAATGAAGTAATGGATGTAGTTAGCAA
GCACTTCCGCCCAGAGTTCTTAAACCGTGTTGATGAAAGTGTGGTATTCCACCCGCTTGGTCAAGAGCACATTAAGTCGA
TTGCATCTATTCAGCTTGAGCGTCTAGCGAAACGCTTAGAAGAAAAAGGTTATCAATTAGAGGTATCCGAGAAAGCCCTC
GATTTGATTGCCCAAGTTGGTTTCGATCCTGTCTATGGTGCGCGACCTTTAAAACGTGCAATTCAACAGAATGTTGAGAA
CCCATTAGCGAAATCAATCTTGGCTGGCCAAATCTTGCCAGACAAGAAAGTACAGTTGATTGTGAACAACGACCAAATCA
TTGCTCACCAGTAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (342-442)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-320)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.713	100	0.473
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	44.07	100	0.442
clpC	Lactococcus lactis subsp. cremoris KW2	46.465	80.863	0.376