Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   Vc3S01_RS14635 Genome accession   NZ_CP020076
Coordinates   3035450..3036178 (+) Length   242 a.a.
NCBI ID   WP_005425318.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20130629003S01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3030450..3041178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vc3S01_RS14620 (Vc3S01_2681) clpC 3030886..3033459 (-) 2574 WP_077201091.1 ATP-dependent chaperone ClpB Regulator
  Vc3S01_RS14625 (Vc3S01_2682) pgeF 3033606..3034334 (-) 729 WP_077201092.1 peptidoglycan editing factor PgeF -
  Vc3S01_RS14630 (Vc3S01_2683) rluD 3034336..3035313 (-) 978 WP_005425317.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Vc3S01_RS14635 (Vc3S01_2684) comL 3035450..3036178 (+) 729 WP_005425318.1 outer membrane protein assembly factor BamD Machinery gene
  Vc3S01_RS14640 (Vc3S01_2685) - 3036321..3037790 (+) 1470 WP_045456505.1 lytic transglycosylase F -
  Vc3S01_RS14645 (Vc3S01_2686) raiA 3038167..3038493 (+) 327 WP_005425319.1 ribosome-associated translation inhibitor RaiA -
  Vc3S01_RS14650 (Vc3S01_2687) pheA 3038737..3039915 (+) 1179 WP_005533293.1 prephenate dehydratase -
  Vc3S01_RS14655 (Vc3S01_2688) yjjX 3039958..3040491 (+) 534 WP_038889003.1 inosine/xanthosine triphosphatase -
  Vc3S01_RS14660 (Vc3S01_2689) trpR 3040607..3040909 (-) 303 WP_005425333.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27847.63 Da        Isoelectric Point: 5.2063

>NTDB_id=184528 Vc3S01_RS14635 WP_005425318.1 3035450..3036178(+) (comL) [Vibrio campbellii strain 20130629003S01]
MKHQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQTSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNVDRSDRDPEPVKKAFDDFKKLLERYPNSPYAED
SQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKAFPDTEAARKSLEIQLEAYKQLKLDDAVARTEELIKLNP
AN

Nucleotide


Download         Length: 729 bp        

>NTDB_id=184528 Vc3S01_RS14635 WP_005425318.1 3035450..3036178(+) (comL) [Vibrio campbellii strain 20130629003S01]
ATGAAACATCAGACTTTAACAGGCCTTTTAGCGGTATCCCTTCTGTTTGGCTGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCTGAACTGTATGCAGACGCGCAAACTTCTCTGCAAAGCGGTAACTGGCTTTCTGCCATCGAAAAACTAG
AAGCTTTGGATTCGCGTTACCCGTTTGGTGCCTACTCTGAGCAGGTACAACTTGACCTTATCTACGCGTACTACAAAAAC
GATGACCTAGCATTAGGTCTGGCAACGATCTCTCGCTTTATGCGTTTGAACCCAACTCACGAAAAAATGGACTGGGTTTT
GTACATGCGTGGTTTGAGCCACATGGCGCAAGATCGTAACTTCATGCATGACTTGTTCAATGTTGATCGTAGTGACCGTG
ATCCGGAGCCAGTGAAGAAAGCATTTGATGACTTCAAAAAACTGCTAGAGCGTTACCCAAACAGCCCATATGCGGAAGAT
TCACAGAAACGTATGGTGGCGCTAAAAAACCGTCTTGCAAACTACGATCTAGCGACGGCAGACTTCTACTTGCGTCGTGA
AGCTTGGATTGCAGCGATCAACCGTTCTCAAGAGCTGCAAAAAGCGTTTCCTGATACAGAAGCGGCGCGCAAATCACTTG
AGATTCAGTTAGAAGCCTACAAGCAATTGAAACTGGATGACGCCGTTGCAAGAACGGAAGAGCTTATCAAGCTTAACCCA
GCAAACTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.174

0.393
  comL Neisseria gonorrhoeae MS11

39.167

99.174

0.388

Multiple sequence alignment