Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1976   Type   Machinery gene
Locus tag   A9E88_RS09990 Genome accession   NZ_CP015946
Coordinates   2248332..2248889 (-) Length   185 a.a.
NCBI ID   WP_010947711.1    Uniprot ID   Q5ZU13
Organism   Legionella pneumophila strain E1_P     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2243332..2253889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9E88_RS09965 (A9E88_09965) - 2243488..2244111 (-) 624 WP_025862380.1 hypothetical protein -
  A9E88_RS09970 (A9E88_09970) - 2244330..2244980 (-) 651 WP_010947707.1 lysoplasmalogenase -
  A9E88_RS09975 (A9E88_09975) - 2245060..2245560 (-) 501 WP_015444348.1 hypothetical protein -
  A9E88_RS09980 (A9E88_09980) - 2246052..2246912 (+) 861 WP_015444347.1 polysaccharide deacetylase family protein -
  A9E88_RS09985 (A9E88_09985) - 2247029..2248222 (-) 1194 WP_010947710.1 murein transglycosylase A -
  A9E88_RS09990 (A9E88_09990) lpp1976 2248332..2248889 (-) 558 WP_010947711.1 hypothetical protein Machinery gene
  A9E88_RS09995 (A9E88_09995) lpp1977 2248886..2249692 (-) 807 WP_010947712.1 PilW family protein Machinery gene
  A9E88_RS10000 (A9E88_10000) lpp1978 2249631..2249945 (-) 315 WP_010947713.1 type IV pilus modification PilV family protein Machinery gene
  A9E88_RS10005 (A9E88_10005) hisC 2250105..2251214 (+) 1110 WP_015444344.1 histidinol-phosphate transaminase -
  A9E88_RS10010 (A9E88_10010) - 2251251..2251592 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  A9E88_RS10015 (A9E88_10015) secF 2251765..2252682 (-) 918 WP_010947716.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21533.91 Da        Isoelectric Point: 6.9393

>NTDB_id=184395 A9E88_RS09990 WP_010947711.1 2248332..2248889(-) (lpp1976) [Legionella pneumophila strain E1_P]
MKKTDSGFILLMTLCITFLMSLLVLASLQQIFLQFKALNSQETFHQNFYQLEHWMMQLARSPLLYAGMDCYLQKDYGANK
IANELVNNKGCVLILNQKKYRYFIEDLNEFSCLVLNKDGQKYASHHFRFTVLQDEEHGESTVMQLRFIKLGSNLSSCPEG
EIQVKEGVSSWRYLPDYKNFEILTG

Nucleotide


Download         Length: 558 bp        

>NTDB_id=184395 A9E88_RS09990 WP_010947711.1 2248332..2248889(-) (lpp1976) [Legionella pneumophila strain E1_P]
ATGAAAAAAACCGATTCCGGTTTCATTCTTTTAATGACGCTCTGTATAACTTTCTTGATGAGCTTATTGGTTTTGGCAAG
CCTCCAGCAGATATTCTTGCAATTCAAAGCACTCAATTCACAGGAGACATTTCATCAAAATTTCTATCAGTTGGAACATT
GGATGATGCAACTCGCTCGTTCACCGTTATTGTATGCAGGTATGGATTGTTATCTGCAAAAGGATTATGGAGCTAATAAA
ATAGCAAACGAGTTAGTTAACAATAAAGGATGTGTGCTCATATTAAATCAGAAAAAATACAGATATTTTATTGAGGACCT
GAATGAATTTTCTTGTTTGGTTCTTAATAAGGATGGGCAAAAATATGCTTCTCACCATTTTAGATTCACCGTATTACAAG
ACGAGGAGCATGGCGAATCTACTGTCATGCAATTAAGGTTTATCAAATTGGGTAGCAATTTGTCCTCTTGTCCAGAGGGG
GAAATACAGGTGAAGGAAGGGGTAAGCAGCTGGAGATACTTGCCAGATTATAAAAATTTTGAAATATTAACTGGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZU13

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1976 Legionella pneumophila str. Paris

95.676

100

0.957
  lpp1976 Legionella pneumophila strain ERS1305867

95.676

100

0.957

Multiple sequence alignment