Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AM448_RS04415 Genome accession   NZ_CP020055
Coordinates   871831..872568 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AR_0069     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 866831..877568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM448_RS04400 (AM448_04455) clpC 867285..869858 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AM448_RS04405 (AM448_04460) yfiH 869988..870719 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  AM448_RS04410 (AM448_04465) rluD 870716..871696 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AM448_RS04415 (AM448_04470) comL 871831..872568 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AM448_RS04425 (AM448_04480) raiA 872839..873180 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AM448_RS25055 pheL 873284..873331 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  AM448_RS04430 (AM448_04485) pheA 873430..874590 (+) 1161 WP_080028718.1 bifunctional chorismate mutase/prephenate dehydratase -
  AM448_RS04435 (AM448_04490) tyrA 874633..875754 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AM448_RS04440 (AM448_04495) aroF 875765..876835 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AM448_RS04445 (AM448_04500) yfiL 877045..877410 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=184318 AM448_RS04415 WP_000197686.1 871831..872568(+) (comL) [Escherichia coli strain AR_0069]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=184318 AM448_RS04415 WP_000197686.1 871831..872568(+) (comL) [Escherichia coli strain AR_0069]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment